BICLUSTER_ID : DNREG-84
PATHOGENS /6/ : escherichia coli,bifidobacterium bifidum,lactobacillus acidophilus,helicobacter pylori,porphyromonas gingivalis,burkholderia pseudomallei
TARGETS /6/ : UQCRC1, APEX1, NDUFS8, MGST3, BCAT2, IDH1
Gene SetLeading Edge Genes
ACEVEDO LIVER TUMOR VS NORMAL ADJACENT TISSUE UPMGST3, EXOSC5, RFC4, H2AFX, RPA3, UCHL5, CCNA2, ICT1, HSPA14, LGTN, THAP11, MCM3, APEX1, EIF2B1, CDC20, WRB, BCAT2, IDH1, PURA, DDX46, LSM4, RNASEH2A, PRC1, ZFAND1
SPIELMAN LYMPHOBLAST EUROPEAN VS ASIAN UPKIF20A, ATPIF1, MUTYH, NUDT3, H2AFX, NDUFS8, CENPF, UQCRC1, CDC20, STIM1, BCAT2, UBE2C, KIF22, ACYP1, LSM4, EBP, HMBS
CORUM DNA SYNTHESOME COMPLEX 15 SUBUNITS
LOPEZ MESOTELIOMA SURVIVAL TIME UP
BENPORATH MYC MAX TARGETS
DEBIASI APOPTOSIS BY REOVIRUS INFECTION DN
RIZ ERYTHROID DIFFERENTIATION CCNE1
BORCZUK MALIGNANT MESOTHELIOMA UP
NCI POLYMERASE SWITCHING
REACTOME CELL CYCLE CHECKPOINTS
KUMAMOTO RESPONSE TO NUTLIN 3A DN
CORUM RC COMPLEX REPLICATION COMPETENT COMPLEX
REACTOME REPAIR SYNTHESIS OF PATCH 27 30 BASES LONG BY DNA POLYMERASE
DING LUNG CANCER EXPRESSION BY COPY NUMBER
CORUM DNA SYNTHESOME COMPLEX 17 SUBUNITS
CORUM RC COMPLEX DURING G2/M-PHASE OF CELL CYCLE
PRAMOONJAGO SOX4 TARGETS DN
REACTOME NUCLEOTIDE EXCISION REPAIR
NCI PROCESSIVE SYNTHESIS ON THE LAGGING STRAND
CORUM C COMPLEX SPLICEOSOME
REACTOME CENTROSOME MATURATION
REACTOME GLOBAL GENOMIC NER
REACTOME POLYMERASE SWITCHING
NCI REPAIR SYNTHESIS FOR GAP FILLING BY DNA POLYMERASE IN TC NER
MOOTHA MITOCHONDRIA
RICKMAN TUMOR DIFFERENTIATED WELL VS POORLY UP
RIZ ERYTHROID DIFFERENTIATION
REACTOME G2 M TRANSITION
REACTOME TRANSCRIPTION COUPLED NER
NCI DNA STRAND ELONGATION
NCI RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES
NCI PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA
SMID BREAST CANCER LUMINAL A DN
MORI MATURE B LYMPHOCYTE DN
NCI LEADING STRAND SYNTHESIS
WEST ADRENOCORTICAL TUMOR UP
LIN APC TARGETS
BIOCARTA MCM PATHWAY
REACTOME BASE EXCISION REPAIR
REACTOME CHOLESTEROL BIOSYNTHESIS
REACTOME REMOVAL OF THE FLAP INTERMEDIATE
NCI POLYMERASE SWITCHING ON THE C STRAND OF THE TELOMERE
ZHONG RESPONSE TO AZACITIDINE AND TSA DN
REACTOME G1 S TRANSITION
CORUM DNA SYNTHESOME COMPLEX 13 SUBUNITS
NCI REPAIR SYNTHESIS OF PATCH 27 30 BASES LONG BY DNA POLYMERASE
NCI TELOMERE C STRAND LAGGING STRAND SYNTHESIS
UDAYAKUMAR MED1 TARGETS UP
KEGG BASE EXCISION REPAIR
AGUIRRE PANCREATIC CANCER COPY NUMBER UP
MOREAUX MULTIPLE MYELOMA BY TACI DN
BOYAULT LIVER CANCER SUBCLASS G3 UP
NCI LAGGING STRAND SYNTHESIS
TANG SENESCENCE TP53 TARGETS DN
REACTOME SYNTHESIS OF DNA
KAUFFMANN DNA REPAIR GENES
REACTOME DNA REPLICATION PRE INITIATION
REACTOME REMOVAL OF DNA PATCH CONTAINING ABASIC RESIDUE
CORUM RC COMPLEX DURING S-PHASE OF CELL CYCLE
MORI EMU MYC LYMPHOMA BY ONSET TIME UP
KEGG NUCLEOTIDE EXCISION REPAIR
Color legend
q-value-1-0.2-0.05-0.01-0.001-0.0001
Color
TABLE OF Q-VALUES
burkholderia pseudomalleilactobacillus acidophilusbifidobacterium bifidumporphyromonas gingivalishelicobacter pylori kx1 npgecescherichia coliGeneSet Name
-0.00532 -0.00129 -0.00072 -0.00366 -0.00733 -0.03431ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_UP
-0.00050 -0.00055 -0.00023 -0.00055 -0.00205 -0.10364SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP
-0.04316 -0.00228 -0.00018 -0.09697 -0.04666 -0.03239CORUM_DNA_SYNTHESOME_COMPLEX_15_SUBUNITS
-0.04587 -0.00399 -0.00051 -0.05952 -0.10536 -0.00060LOPEZ_MESOTELIOMA_SURVIVAL_TIME_UP
-0.00007 -0.01279 -0.01077 -0.02655 -0.01238 -0.12362BENPORATH_MYC_MAX_TARGETS
-0.12467 -0.00511 -0.00373 -0.09545 -0.00577 -0.15426DEBIASI_APOPTOSIS_BY_REOVIRUS_INFECTION_DN
-0.03149 -0.03924 -0.05165 -0.09281 -0.02432 -0.15803RIZ_ERYTHROID_DIFFERENTIATION_CCNE1
-0.00016 -0.00187 -0.00139 -0.00191 -0.00038 -0.14538BORCZUK_MALIGNANT_MESOTHELIOMA_UP
-0.02540 -0.03847 -0.00062 -0.03735 -0.01067 -0.02406NCI_POLYMERASE_SWITCHING
-0.02029 -0.00613 -0.00026 -0.00004 -0.00086 -0.03627REACTOME_CELL_CYCLE_CHECKPOINTS
-0.00073 -0.00892 -0.02902 -0.07522 -0.08108 -0.00055KUMAMOTO_RESPONSE_TO_NUTLIN_3A_DN
-0.06193 -0.03570 -0.00390 -0.11393 -0.10314 -0.08929CORUM_RC_COMPLEX_REPLICATION_COMPETENT_COMPLEX
-0.00197 -0.00287 -0.00005 -0.10690 -0.05940 -0.00115REACTOME_REPAIR_SYNTHESIS_OF_PATCH_27_30_BASES_LONG_BY_DNA_POLYMERASE
-0.13481 -0.19751 -0.07736 -0.01809 -0.14078 -0.06348DING_LUNG_CANCER_EXPRESSION_BY_COPY_NUMBER
-0.00750 -0.00058 -0.00005 -0.10704 -0.02450 -0.01981CORUM_DNA_SYNTHESOME_COMPLEX_17_SUBUNITS
-0.00378 -0.00069 -0.00028 -0.02345 -0.04330 -0.04060CORUM_RC_COMPLEX_DURING_G2/M-PHASE_OF_CELL_CYCLE
-0.00016 -0.01315 -0.00435 -0.15277 -0.02101 -0.00641PRAMOONJAGO_SOX4_TARGETS_DN
-0.00208 -0.00033 -0.00004 -0.00069 -0.07672 -0.00018REACTOME_NUCLEOTIDE_EXCISION_REPAIR
-0.08753 -0.03589 -0.00289 -0.04140 -0.03171 -0.14204NCI_PROCESSIVE_SYNTHESIS_ON_THE_LAGGING_STRAND
-0.00007 -0.00009 -0.00007 -0.00329 -0.18371 -0.19973CORUM_C_COMPLEX_SPLICEOSOME
-0.03691 -0.09600 -0.04334 -0.00441 -0.00297 -0.00057REACTOME_CENTROSOME_MATURATION
-0.01224 -0.00101 -0.00003 -0.00963 -0.06173 -0.00018REACTOME_GLOBAL_GENOMIC_NER
-0.02651 -0.03521 -0.00061 -0.04189 -0.07609 -0.02068REACTOME_POLYMERASE_SWITCHING
-0.00243 -0.00254 -0.00006 -0.10445 -0.05413 -0.00127NCI_REPAIR_SYNTHESIS_FOR_GAP_FILLING_BY_DNA_POLYMERASE_IN_TC_NER
-0.00178 -0.00039 -0.00104 -0.00039 -0.00294 -0.16932MOOTHA_MITOCHONDRIA
-0.01642 -0.06171 -0.02139 -0.07138 -0.03512 -0.05317RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_UP
-0.00074 -0.00885 -0.00143 -0.11171 -0.17696 -0.00491RIZ_ERYTHROID_DIFFERENTIATION
-0.03193 -0.00886 -0.00061 -0.00453 -0.00240 -0.00142REACTOME_G2_M_TRANSITION
-0.00209 -0.00076 -0.00003 -0.00087 -0.06469 -0.00131REACTOME_TRANSCRIPTION_COUPLED_NER
-0.11392 -0.05030 -0.00813 -0.08451 -0.18027 -0.14663NCI_DNA_STRAND_ELONGATION
-0.10845 -0.12679 -0.05676 -0.01427 -0.00296 -0.00253NCI_RECRUITMENT_OF_MITOTIC_CENTROSOME_PROTEINS_AND_COMPLEXES
-0.00316 -0.00512 -0.00077 -0.00458 -0.04685 -0.19450NCI_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA
-0.00115 -0.06884 -0.00278 -0.19052 -0.05918 -0.12346SMID_BREAST_CANCER_LUMINAL_A_DN
-0.00680 -0.05857 -0.00292 -0.15656 -0.00237 -0.10957MORI_MATURE_B_LYMPHOCYTE_DN
-0.10597 -0.06159 -0.00774 -0.09510 -0.18356 -0.14245NCI_LEADING_STRAND_SYNTHESIS
-0.00115 -0.00173 -0.00673 -0.04057 -0.00298 -0.10340WEST_ADRENOCORTICAL_TUMOR_UP
-0.04428 -0.06442 -0.01128 -0.10762 -0.01700 -0.14693LIN_APC_TARGETS
-0.00312 -0.00259 -0.00013 -0.16828 -0.04486 -0.00957BIOCARTA_MCM_PATHWAY
-0.09416 -0.01351 -0.00624 -0.06821 -0.08417 -0.00472REACTOME_BASE_EXCISION_REPAIR
-0.12827 -0.00604 -0.06933 -0.01829 -0.00080 -0.01316REACTOME_CHOLESTEROL_BIOSYNTHESIS
-0.00365 -0.00820 -0.00040 -0.19225 -0.14811 -0.02198REACTOME_REMOVAL_OF_THE_FLAP_INTERMEDIATE
-0.01932 -0.03853 -0.00070 -0.04212 -0.01227 -0.02772NCI_POLYMERASE_SWITCHING_ON_THE_C_STRAND_OF_THE_TELOMERE
-0.00012 -0.01392 -0.00057 -0.00819 -0.03620 -0.01151ZHONG_RESPONSE_TO_AZACITIDINE_AND_TSA_DN
-0.04051 -0.00092 -0.00002 -0.00005 -0.00298 -0.15306REACTOME_G1_S_TRANSITION
-0.01432 -0.00268 -0.00025 -0.05256 -0.07647 -0.03605CORUM_DNA_SYNTHESOME_COMPLEX_13_SUBUNITS
-0.00235 -0.00243 -0.00006 -0.10699 -0.05073 -0.00130NCI_REPAIR_SYNTHESIS_OF_PATCH__27_30_BASES_LONG__BY_DNA_POLYMERASE
-0.10843 -0.06068 -0.00811 -0.08378 -0.06192 -0.14496NCI_TELOMERE_C_STRAND__LAGGING_STRAND__SYNTHESIS
-0.00040 -0.00066 -0.00182 -0.13828 -0.01394 -0.07354UDAYAKUMAR_MED1_TARGETS_UP
-0.00205 -0.00130 -0.00058 -0.05239 -0.02953 -0.00057KEGG_BASE_EXCISION_REPAIR
-0.17696 -0.09091 -0.05690 -0.02264 -0.02542 -0.14397AGUIRRE_PANCREATIC_CANCER_COPY_NUMBER_UP
-0.00204 -0.01167 -0.00105 -0.00320 -0.04602 -0.02459MOREAUX_MULTIPLE_MYELOMA_BY_TACI_DN
-0.00012 -0.00011 -0.00018 -0.00085 -0.00563 -0.05717BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP
-0.10650 -0.06207 -0.00776 -0.08373 -0.18516 -0.14565NCI_LAGGING_STRAND_SYNTHESIS
-0.00127 -0.00887 -0.00022 -0.01342 -0.02427 -0.00033TANG_SENESCENCE_TP53_TARGETS_DN
-0.04929 -0.03098 -0.00140 -0.00002 -0.00059 -0.17829REACTOME_SYNTHESIS_OF_DNA
-0.00140 -0.00009 -0.00001 -0.03015 -0.06811 -0.00003KAUFFMANN_DNA_REPAIR_GENES
-0.18352 -0.01571 -0.00189 -0.00014 -0.00239 -0.19797REACTOME_DNA_REPLICATION_PRE_INITIATION
-0.05423 -0.09855 -0.05102 -0.11973 -0.19085 -0.00964REACTOME_REMOVAL_OF_DNA_PATCH_CONTAINING_ABASIC_RESIDUE
-0.03038 -0.00101 -0.00007 -0.06132 -0.03156 -0.07633CORUM_RC_COMPLEX_DURING_S-PHASE_OF_CELL_CYCLE
-0.00070 -0.02388 -0.00150 -0.19698 -0.09524 -0.01552MORI_EMU_MYC_LYMPHOMA_BY_ONSET_TIME_UP
-0.01443 -0.00448 -0.00238 -0.00290 -0.04356 -0.00032KEGG_NUCLEOTIDE_EXCISION_REPAIR