BICLUSTER_ID : DNREG-92
PATHOGENS /5/ : aggregatibacter actinomycetemcomitans,aeromonas caviae,mycobacterium tuberculosis,porphyromonas gingivalis,helicobacter pylori
TARGETS /3/ : GAMT, APEX1, ALDH9A1
Gene SetLeading Edge Genes
LINDGREN BLADDER CANCER CLUSTER 3 UPCCNE1, VRK1, PCNA, TMPO, PLK1, CCNB1, RAD51, RNASEH2A, AK2, ALDH9A1, RPA3, BIRC5
PAL PRMT5 TARGETS UPAPEX1, COPS3, TMPO
BLUM RESPONSE TO SALIRASIB DNGAMT, VRK1, PCNA, TMPO, PLK1, CCNE2, ITGB3BP, PBK, RAD51, RNASEH2A, GALNT2, HMMR, CCNA2, HSPA14
RHEIN ALL GLUCOCORTICOID THERAPY DNVRK1, PCNA, APEX1, MLF1IP, ZWINT, POLE2, MRPS33, ITGB3BP, RAD51, AK2, HMMR, BIRC5
REACTOME CELL CYCLE MITOTICKIF18A, PCNA, ZWINT, PLK1, CCNE2, CCNB1, ITGB3BP, RPA3, CCNA2, BIRC5
FURUKAWA DUSP6 TARGETS PCI35 DN
REACTOME LATE PHASE OF HIV LIFE CYCLE
PUJANA BRCA1 PCC NETWORK
LI WILMS TUMOR VS FETAL KIDNEY 1 DN
RHODES UNDIFFERENTIATED CANCER
REACTOME RNA POLYMERASE II TRANSCRIPTION
REACTOME TELOMERE MAINTENANCE
ODONNELL TARGETS OF MYC AND TFRC DN
REACTOME NUCLEOTIDE EXCISION REPAIR
REACTOME ABORTIVE ELONGATION OF HIV1 TRANSCRIPT IN THE ABSENCE OF TAT
REACTOME MITOTIC PROMETAPHASE
WINNEPENNINCKX MELANOMA METASTASIS UP
NCI ELONGATION OF INTRON CONTAINING TRANSCRIPTS AND CO TRANSCRIPTIONAL MRNA SPLICING
REACTOME MRNA SPLICING
MOREAUX B LYMPHOCYTE MATURATION BY TACI DN
NCI VIRAL MESSENGER RNA SYNTHESIS
REACTOME GLOBAL GENOMIC NER
MARKEY RB1 ACUTE LOF DN
MUELLER PLURINET
BASAKI YBX1 TARGETS UP
NCI ABORTIVE ELONGATION OF HIV 1 TRANSCRIPT IN THE ABSENCE OF TAT
ZHANG BREAST CANCER PROGENITORS UP
REACTOME ELONGATION AND PROCESSING OF CAPPED TRANSCRIPTS
REACTOME TRANSCRIPTION COUPLED NER
NCI MRNA CAPPING
KEGG RNA POLYMERASE
REACTOME MRNA SPLICING MINOR PATHWAY
NCI PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA
NCI MITOTIC PROMETAPHASE
YU MYC TARGETS UP
LE EGR2 TARGETS UP
CHIANG LIVER CANCER SUBCLASS UNANNOTATED DN
FERREIRA EWINGS SARCOMA UNSTABLE VS STABLE UP
PUJANA CHEK2 PCC NETWORKPCNA, AGL, POLE3, ABCE1, ZWINT, TMPO, PLK1, CCNB1, RAN, ITGB3BP, SLBP, RPA3, CCNA2, ICT1, ATP5O, VRK1, CCNE2, CCT5, COPS3, RNASEH2A
NCI MRNA SPLICING MAJOR PATHWAY
KINSEY TARGETS OF EWSR1 FLII FUSION UP
FOURNIER ACINAR DEVELOPMENT LATE 2
GARGALOVIC RESPONSE TO OXIDIZED PHOSPHOLIPIDS TURQUOISE DN
REACTOME S PHASE
MORI LARGE PRE BII LYMPHOCYTE UP
KEGG CELL CYCLE
REACTOME METABOLISM OF RNA
MOREAUX MULTIPLE MYELOMA BY TACI DN
RHODES CANCER META SIGNATURE
NCI HIV 1 TRANSCRIPTION ELONGATION
REACTOME SYNTHESIS OF DNA
SHEDDEN LUNG CANCER POOR SURVIVAL A6
REACTOME HIV LIFE CYCLE
REACTOME FORMATION AND MATURATION OF MRNA TRANSCRIPT
NCI MRNA SPLICING MINOR PATHWAY
DODD NASOPHARYNGEAL CARCINOMA DN
KEGG NUCLEOTIDE EXCISION REPAIR
BENPORATH PROLIFERATIONRAD51, PCNA, BIRC5
Color legend
q-value-1-0.2-0.05-0.01-0.001-0.0001
Color
TABLE OF Q-VALUES
helicobacter pylori kx2 npgecporphyromonas gingivalismycobacterium tuberculosisaeromonas caviahelicobacter pylori kx1 npgecaggregatibacter actinomycetemcomitansGeneSet Name
-0.00379 -0.02524 -0.00491 -0.00804 -0.00109 -0.00227LINDGREN_BLADDER_CANCER_CLUSTER_3_UP
-0.00055 -0.00394 -0.01450 -0.00510 -0.00038 -0.00051PAL_PRMT5_TARGETS_UP
-0.01232 -0.01336 -0.00002 -0.01909 -0.00297 -0.00008BLUM_RESPONSE_TO_SALIRASIB_DN
-0.00435 -0.00437 -0.01386 -0.00008 -0.00293 -0.04316RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN
-0.00105 -0.00002 -0.00028 -0.01738 -0.00054 -0.01005REACTOME_CELL_CYCLE_MITOTIC
-0.06729 -0.02975 -0.00012 -0.06045 -0.03040 -0.00421FURUKAWA_DUSP6_TARGETS_PCI35_DN
-0.17593 -0.00065 -0.05945 -0.00060 -0.13509 -0.04575REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE
-0.04039 -0.02359 -0.12426 -0.02210 -0.03725 -0.12299PUJANA_BRCA1_PCC_NETWORK
-0.02224 -0.18322 -0.00014 -0.04133 -0.01328 -0.14017LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_DN
-0.00065 -0.00835 -0.00660 -0.08510 -0.00202 -0.00010RHODES_UNDIFFERENTIATED_CANCER
-0.16819 -0.00011 -0.16804 -0.00627 -0.10819 -0.00029REACTOME_RNA_POLYMERASE_II_TRANSCRIPTION
-0.05244 -0.04272 -0.02484 -0.17908 -0.01607 -0.14016REACTOME_TELOMERE_MAINTENANCE
-0.08707 -0.02032 -0.03017 -0.10956 -0.02871 -0.00563ODONNELL_TARGETS_OF_MYC_AND_TFRC_DN
-0.09745 -0.00069 -0.00034 -0.02788 -0.07672 -0.00561REACTOME_NUCLEOTIDE_EXCISION_REPAIR
-0.09746 -0.00311 -0.05031 -0.03379 -0.16690 -0.00370REACTOME_ABORTIVE_ELONGATION_OF_HIV1_TRANSCRIPT_IN_THE_ABSENCE_OF_TAT
-0.00148 -0.02038 -0.00015 -0.01572 -0.00233 -0.06546REACTOME_MITOTIC_PROMETAPHASE
-0.00153 -0.00003 -0.00002 -0.00221 -0.00684 -0.00130WINNEPENNINCKX_MELANOMA_METASTASIS_UP
-0.03275 -0.00459 -0.04820 -0.00192 -0.08279 -0.01010NCI_ELONGATION_OF_INTRON_CONTAINING_TRANSCRIPTS_AND_CO_TRANSCRIPTIONAL_MRNA_SPLICING
-0.06601 -0.00001 -0.05098 -0.00214 -0.13158 -0.00014REACTOME_MRNA_SPLICING
-0.04233 -0.00539 -0.11011 -0.02451 -0.03248 -0.03024MOREAUX_B_LYMPHOCYTE_MATURATION_BY_TACI_DN
-0.01981 -0.00004 -0.10798 -0.00344 -0.09198 -0.00032NCI_VIRAL_MESSENGER_RNA_SYNTHESIS
-0.08982 -0.00963 -0.00003 -0.14426 -0.06173 -0.12872REACTOME_GLOBAL_GENOMIC_NER
-0.00537 -0.15592 -0.00002 -0.03439 -0.00100 -0.00587MARKEY_RB1_ACUTE_LOF_DN
-0.07611 -0.00024 -0.00113 -0.01895 -0.10442 -0.04867MUELLER_PLURINET
-0.00636 -0.01567 -0.00260 -0.00186 -0.00458 -0.00039BASAKI_YBX1_TARGETS_UP
-0.07079 -0.00365 -0.03917 -0.03056 -0.19499 -0.00129NCI_ABORTIVE_ELONGATION_OF_HIV_1_TRANSCRIPT_IN_THE_ABSENCE_OF_TAT
-0.04272 -0.02283 -0.00038 -0.02211 -0.01156 -0.01073ZHANG_BREAST_CANCER_PROGENITORS_UP
-0.12318 -0.00004 -0.03736 -0.00188 -0.13265 -0.00085REACTOME_ELONGATION_AND_PROCESSING_OF_CAPPED_TRANSCRIPTS
-0.12290 -0.00087 -0.00065 -0.01564 -0.06469 -0.00673REACTOME_TRANSCRIPTION_COUPLED_NER
-0.04683 -0.00988 -0.13473 -0.00231 -0.05787 -0.00364NCI_MRNA_CAPPING
-0.18788 -0.02723 -0.09151 -0.13324 -0.17842 -0.00474KEGG_RNA_POLYMERASE
-0.04166 -0.00064 -0.01367 -0.00519 -0.07566 -0.00045REACTOME_MRNA_SPLICING_MINOR_PATHWAY
-0.01014 -0.00458 -0.10453 -0.01716 -0.04685 -0.01799NCI_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA
-0.00583 -0.02882 -0.00003 -0.05777 -0.00299 -0.16560NCI_MITOTIC_PROMETAPHASE
-0.00132 -0.03945 -0.00255 -0.00075 -0.00084 -0.00022YU_MYC_TARGETS_UP
-0.01341 -0.04284 -0.04583 -0.05330 -0.00338 -0.00010LE_EGR2_TARGETS_UP
-0.00042 -0.00284 -0.14510 -0.00408 -0.00179 -0.00039CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN
-0.01181 -0.06682 -0.00357 -0.15511 -0.01555 -0.00030FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_UP
-0.00736 -0.00364 -0.00144 -0.00037 -0.00673 -0.00106PUJANA_CHEK2_PCC_NETWORK
-0.00638 -0.00002 -0.02478 -0.00363 -0.01681 -0.00014NCI_MRNA_SPLICING___MAJOR_PATHWAY
-0.00192 -0.01136 -0.00940 -0.00039 -0.00330 -0.00655KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP
-0.00795 -0.00037 -0.09804 -0.00027 -0.00300 -0.07933FOURNIER_ACINAR_DEVELOPMENT_LATE_2
-0.00202 -0.00002 -0.00193 -0.13196 -0.02324 -0.06733GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_TURQUOISE_DN
-0.00017 -0.00004 -0.14471 -0.05997 -0.00088 -0.00982REACTOME_S_PHASE
-0.01198 -0.03260 -0.00009 -0.08123 -0.01648 -0.04933MORI_LARGE_PRE_BII_LYMPHOCYTE_UP
-0.00787 -0.10582 -0.06629 -0.16594 -0.00463 -0.19479KEGG_CELL_CYCLE
-0.00771 -0.00132 -0.05197 -0.03500 -0.03769 -0.17872REACTOME_METABOLISM_OF_RNA
-0.10216 -0.00320 -0.00807 -0.00005 -0.04602 -0.01891MOREAUX_MULTIPLE_MYELOMA_BY_TACI_DN
-0.04160 -0.06689 -0.17263 -0.00533 -0.03118 -0.18769RHODES_CANCER_META_SIGNATURE
-0.02062 -0.00555 -0.02802 -0.00209 -0.06130 -0.00086NCI_HIV_1_TRANSCRIPTION_ELONGATION
-0.00016 -0.00002 -0.18874 -0.13465 -0.00059 -0.02170REACTOME_SYNTHESIS_OF_DNA
-0.02761 -0.00219 -0.00051 -0.00092 -0.03282 -0.00025SHEDDEN_LUNG_CANCER_POOR_SURVIVAL_A6
-0.17563 -0.00047 -0.04021 -0.00221 -0.16079 -0.02230REACTOME_HIV_LIFE_CYCLE
-0.12357 -0.00004 -0.08296 -0.00227 -0.08754 -0.00084REACTOME_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT
-0.05016 -0.00064 -0.01368 -0.00883 -0.09559 -0.00046NCI_MRNA_SPLICING___MINOR_PATHWAY
-0.03870 -0.02277 -0.17486 -0.06032 -0.06590 -0.07577DODD_NASOPHARYNGEAL_CARCINOMA_DN
-0.15205 -0.00290 -0.00038 -0.02124 -0.04356 -0.04266KEGG_NUCLEOTIDE_EXCISION_REPAIR
-0.00449 -0.02164 -0.03741 -0.01238 -0.00727 -0.00048BENPORATH_PROLIFERATION