Details of DNA Microarray Datasets Used in the Study

 

S/N GEO Acc # Pathogen Name Gram Stain Platform Organism Target Cell/Tissue
1 GSE6765 Aeromonas caviae (epa72) Negative GPL1261 Mus musculus Neonatal mouse small intestinal tissue
2 GSE9723 Aggregatibacter actinomycetemcomitans Negative GPL96 Homo sapiens Human immortalized gingival keratinocyte
3 GSE2600 Anaplasma phagocytophilum Negative GPL570 Homo sapiens Promyelocytic cells (NB4)
4 GSE14390 Bacillus anthracis (7702) Positive GPL570 Homo sapiens Human alveolar macrophage
5 GSE14686 Bacteroides thetaiotaomicron Negative GPL1261 Mus musculus Proximal colon of mouse
6 GSE20302 Bifidobacterium bifidum Positive GPL1261 Mus musculus Bone marrow-derived dendritic cells (BMDD)
7 GSE8385 Brucella melitensis Negative GPL81 Mus musculus Macrophage cell lines (RAW 264.7)
8 GSE8385 Brucella neotomae Negative GPL81 Mus musculus Macrophage cell lines (RAW 264.7)
9 GSE8385 Brucella ovis Negative GPL81 Mus musculus Macrophage cell lines (RAW 264.7)
10 GSE7577 Burkholderia pseudomallei Negative GPL96 Homo sapiens Human monocytic macrophage ell lines (THP-1)
11 GSE6688 Chlamydia pneumoniae Negative GPL339 Mus musculus Lung
12 GSE8966 Ehrlichia chaffeensis (arkansas, wakulla, liberty) Negative GPL1261 Mus musculus Liver
13 GSE19315 Escherichia coli Negative GPL570 Homo sapiens Human monocytic macrophage ell lines (THP-1) cells
14 GSE14686 Eubacterium rectale Positive GPL1261 Mus musculus Proximal colon of mouse
15 GSE6927 Fusobacterium nucleatum Negative GPL96 Homo sapiens Human immortalized gingival keratinocytes cells (HIGC)
16 GSE10262 Helicobacter pylori (kx1, kx2) Negative GPL1261 Mus musculus Gastric epithelial progenitor and non-progenitor cells
17 GSE581 Helicobacter pylori Negative GPL193 Homo sapiens Gastric biopsies
18 GSE20302 Lactobacillus acidophilus (ncfm) Positive GPL1261 Mus musculus Bone marrow-derived dendritic cells (BMDD)
19 GSE9946 Listeria monocytogenes Positive GPL96 Homo sapiens Monocyte-derived dendritic cells
20 GSE17477 Mycobacterium tuberculosis none GPL571 Homo sapiens Human monocytic macrophage ell lines (THP-1)
21 GSE9723 Porphyromonas gingivalis Negative GPL96 Homo sapiens Human immortalized gingival keratinocytes cells(HIGC)
22 GSE1469 Pseudomonas aeruginosa (pak) Negative GPL91 Homo sapiens Lung pneumocytes cell line (A549)
23 GSE923 Pseudomonas aeruginosa (fdr1234, fdr875,fdr1, fdr440) Negative GPL96 Homo sapiens Calu-3 human lung epithelial cells
24 GSE19315 Shigella dysenteriae Negative GPL570 Homo sapiens Human monocytic macrophage ell lines (THP-1) cells
25 GSE6802 Staphylococcus aureus Positive GPL571 Homo sapiens Bronchial epithelial cells beas-2b
26 GSE6927 Streptococcus gordonii Positive GPL96 Homo sapiens Human immortalized gingival keratinocytes cells (HIGC)
27 GSE8527 Streptococcus pneumoniae (d39, g54, tigr4) Positive GPL570 Homo sapiens Pharyngeal epithelial cell lines (Detroit 562)
28 GSE11494 Streptococcus pyogenes (90-226) Positive GPL1261 Mus musculus Nasal-associated lymphoid tissue (NALT)
29 GSE2973 Yersinia enterocolitica (wap, p60) Negative GPL339 Mus musculus Bone marrow-derived macrophages (BMDM) BALB/C and C57BL/6