MyClusterParams Member List

This is the complete list of members for MyClusterParams, including all inherited members.

getAnneal() const (defined in MyClusterParams)	MyClusterParams	[inline]
getApriori() const (defined in MyClusterParams)	MyClusterParams	[inline]
getBeta() const (defined in MyClusterParams)	MyClusterParams	[inline]
getClassFileName() const (defined in MyClusterParams)	MyClusterParams	[inline]
getCommandLine() const (defined in MyClusterParams)	MyClusterParams	[inline]
getComputeCorrelations() const (defined in MyClusterParams)	MyClusterParams	[inline]
getComputeItemsets(unsigned int which=0) const (defined in MyClusterParams)	MyClusterParams	[inline]
getComputeStatistics() const (defined in MyClusterParams)	MyClusterParams	[inline]
getConfigFileName() const (defined in MyClusterParams)	MyClusterParams	[inline]
getCorrelationThreshold() const (defined in MyClusterParams)	MyClusterParams	[inline]
getDataType() const (defined in MyClusterParams)	MyClusterParams	[inline]
getDelimiter() const (defined in MyClusterParams)	MyClusterParams	[inline]
getFileFormat(unsigned int which) const (defined in MyClusterParams)	MyClusterParams	[inline]
getFlip() const (defined in MyClusterParams)	MyClusterParams	[inline]
getGeneIdColumn(unsigned int whichPointSet) const (defined in MyClusterParams)	MyClusterParams	[inline]
getGeneNameColumn(unsigned int whichPointSet) const (defined in MyClusterParams)	MyClusterParams	[inline]
getGenerateData() const (defined in MyClusterParams)	MyClusterParams	[inline]
getGenesFileName() const (defined in MyClusterParams)	MyClusterParams	[inline]
getGreedy() const (defined in MyClusterParams)	MyClusterParams	[inline]
getInputFileName(int index=0) const (defined in MyClusterParams)	MyClusterParams	[inline]
getLimitFileName(unsigned int which=0) const (defined in MyClusterParams)	MyClusterParams	[inline]
getLowerBoundForFiltering() const (defined in MyClusterParams)	MyClusterParams	[inline]
getLowerBoundGiven() const (defined in MyClusterParams)	MyClusterParams	[inline]
getMaxCount() const (defined in MyClusterParams)	MyClusterParams	[inline]
getMaximumDownRegulated() const (defined in MyClusterParams)	MyClusterParams	[inline]
getMaxPointCount() const (defined in MyClusterParams)	MyClusterParams	[inline]
getMaxPValue() const (defined in MyClusterParams)	MyClusterParams	[inline]
getMinimiseClusterSize() const (defined in MyClusterParams)	MyClusterParams	[inline]
getMinimumHomogeneity() const (defined in MyClusterParams)	MyClusterParams	[inline]
getMinimumSupport() const (defined in MyClusterParams)	MyClusterParams	[inline]
getMinimumUpRegulated() const (defined in MyClusterParams)	MyClusterParams	[inline]
getNumBestClusters() const (defined in MyClusterParams)	MyClusterParams	[inline]
getNumClustersToCompute() const (defined in MyClusterParams)	MyClusterParams	[inline]
getNumDiscs(unsigned int index=0) const (defined in MyClusterParams)	MyClusterParams	[inline]
getNumLimitSets() const (defined in MyClusterParams)	MyClusterParams	[inline]
getNumNames() const (defined in MyClusterParams)	MyClusterParams	[inline]
getNumPointSets() const (defined in MyClusterParams)	MyClusterParams	[inline]
getNumPointsToRead() const (defined in MyClusterParams)	MyClusterParams	[inline]
getNumSeeds(unsigned int index=0) const (defined in MyClusterParams)	MyClusterParams	[inline]
getOutputFileName() const (defined in MyClusterParams)	MyClusterParams	[inline]
getOutputInternalValuesFileName() const (defined in MyClusterParams)	MyClusterParams	[inline]
getPartition() const (defined in MyClusterParams)	MyClusterParams	[inline]
getRepeatFileName() const (defined in MyClusterParams)	MyClusterParams	[inline]
getRowNameColumn() const (defined in MyClusterParams)	MyClusterParams	[inline]
getSaveMemory() const (defined in MyClusterParams)	MyClusterParams	[inline]
getShamir() const (defined in MyClusterParams)	MyClusterParams	[inline]
getSimilarityThreshold() const (defined in MyClusterParams)	MyClusterParams	[inline]
getSizeDisc(unsigned int index=0) const (defined in MyClusterParams)	MyClusterParams	[inline]
getUpperBoundForFiltering() const (defined in MyClusterParams)	MyClusterParams	[inline]
getUpperBoundGiven() const (defined in MyClusterParams)	MyClusterParams	[inline]
getUseGaussian() const (defined in MyClusterParams)	MyClusterParams	[inline]
getUseLogarithm() const (defined in MyClusterParams)	MyClusterParams	[inline]
getUseSignificantIntervals(unsigned int which=0) const (defined in MyClusterParams)	MyClusterParams	[inline]
getUseUniform() const (defined in MyClusterParams)	MyClusterParams	[inline]
getVerbosity() const (defined in MyClusterParams)	MyClusterParams	[inline]
getWidth() const (defined in MyClusterParams)	MyClusterParams	[inline]
getWidthFileName() const (defined in MyClusterParams)	MyClusterParams	[inline]
getWidthRangeFileName() const (defined in MyClusterParams)	MyClusterParams	[inline]
maximumDownRegulatedGiven() const (defined in MyClusterParams)	MyClusterParams	[inline]
minimumUpRegulatedGiven() const (defined in MyClusterParams)	MyClusterParams	[inline]
MyCluster (defined in MyClusterParams)	MyClusterParams	[friend]
MyClusterParams() (defined in MyClusterParams)	MyClusterParams
print(ostream &ostr) const (defined in MyClusterParams)	MyClusterParams
readConfigFile() (defined in MyClusterParams)	MyClusterParams
set(gengetopt_args_info &cl, unsigned int whichPointSet=0, bool update=false) (defined in MyClusterParams)	MyClusterParams
set(int numPoints, int numDimensions, unsigned int index=0) (defined in MyClusterParams)	MyClusterParams	[inline]
setCommandLine(int argc, char **argv) (defined in MyClusterParams)	MyClusterParams	[inline]
setMaxCount(int m) (defined in MyClusterParams)	MyClusterParams	[inline]
setMinimumHomogeneity(MyNT q) (defined in MyClusterParams)	MyClusterParams	[inline]
setSizeDisc(int sd, unsigned int index=0) (defined in MyClusterParams)	MyClusterParams	[inline]
setUseSignificantIntervals(unsigned int which=0, bool val=true) (defined in MyClusterParams)	MyClusterParams	[inline]