Public Member Functions |
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MyNT | getMinimumSupport () const |
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bool | getAnneal () const |
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bool | getApriori () const |
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MyNT | getBeta () const |
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string | getClassFileName () const |
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string | getCommandLine () const |
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void | setCommandLine (int argc, char **argv) |
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string | getConfigFileName () const |
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void | readConfigFile () |
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bool | getComputeCorrelations () const |
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MyNT | getCorrelationThreshold () const |
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MyDataType | getDataType () const |
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char | getDelimiter () const |
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MyAffyFileFormat | getFileFormat (unsigned int which) const |
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bool | getFlip () const |
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bool | getUseGaussian () const |
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bool | getGreedy () const |
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bool | getGenerateData () const |
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string | getGenesFileName () const |
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string | getGeneIdColumn (unsigned int whichPointSet) const |
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string | getGeneNameColumn (unsigned int whichPointSet) const |
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string | getInputFileName (int index=0) const |
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bool | getComputeItemsets (unsigned int which=0) const |
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int | getNumLimitSets () const |
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string | getLimitFileName (unsigned int which=0) const |
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MyNT | getLowerBoundForFiltering () const |
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bool | getLowerBoundGiven () const |
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bool | getUseLogarithm () const |
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bool | getSaveMemory () const |
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int | getMaxCount () const |
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void | setMaxCount (int m) |
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MyNT | getMaximumDownRegulated () const |
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bool | maximumDownRegulatedGiven () const |
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MyNT | getMinimumUpRegulated () const |
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bool | minimumUpRegulatedGiven () const |
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bool | getMinimiseClusterSize () const |
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MyNT | getMinimumHomogeneity () const |
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void | setMinimumHomogeneity (MyNT q) |
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int | getNumNames () const |
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int | getNumPointsToRead () const |
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int | getNumBestClusters () const |
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int | getNumClustersToCompute () const |
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int | getNumDiscs (unsigned int index=0) const |
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unsigned int | getNumPointSets () const |
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int | getNumSeeds (unsigned int index=0) const |
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string | getOutputFileName () const |
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string | getOutputInternalValuesFileName () const |
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bool | getPartition () const |
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int | getMaxPointCount () const |
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MyNT | getMaxPValue () const |
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string | getRepeatFileName () const |
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string | getWidthRangeFileName () const |
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string | getRowNameColumn () const |
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bool | getUseSignificantIntervals (unsigned int which=0) const |
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void | setUseSignificantIntervals (unsigned int which=0, bool val=true) |
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bool | getComputeStatistics () const |
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int | getSizeDisc (unsigned int index=0) const |
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void | setSizeDisc (int sd, unsigned int index=0) |
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MyNT | getSimilarityThreshold () const |
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bool | getShamir () const |
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void | set (gengetopt_args_info &cl, unsigned int whichPointSet=0, bool update=false) |
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bool | getUseUniform () const |
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MyNT | getUpperBoundForFiltering () const |
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bool | getUpperBoundGiven () const |
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MyVerbosityLevel | getVerbosity () const |
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MyNT | getWidth () const |
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string | getWidthFileName () const |
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void | print (ostream &ostr) const |
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void | set (int numPoints, int numDimensions, unsigned int index=0) |
Friends |
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class | MyCluster |
1.7.6.1
