cmdline.h

#ifndef CMDLINE_H
#define CMDLINE_H

/* If we use autoconf.  */
#ifdef HAVE_CONFIG_H
#include "config.h"
#endif

#include <stdio.h> /* for FILE */

#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */

#ifndef CMDLINE_PARSER_PACKAGE

#define CMDLINE_PARSER_PACKAGE "cluster"
#endif

#ifndef CMDLINE_PARSER_PACKAGE_NAME

#define CMDLINE_PARSER_PACKAGE_NAME "cluster"
#endif

#ifndef CMDLINE_PARSER_VERSION

#define CMDLINE_PARSER_VERSION "2.0"
#endif

struct gengetopt_args_info
{
  const char *help_help; 
  const char *version_help; 
  float alpha_arg;      
  char * alpha_orig;    
  const char *alpha_help; 
  int anneal_flag;      
  const char *anneal_help; 
  int apriori_flag;     
  const char *apriori_help; 
  char * classes_arg;   
  char * classes_orig;  
  const char *classes_help; 
  char * config_arg;    
  char * config_orig;   
  const char *config_help; 
  float correlations_arg;       
  char * correlations_orig;     
  const char *correlations_help; 
  int flip_flag;        
  const char *flip_help; 
  int filter_flag;      
  const char *filter_help; 
  int gibbs_flag;       
  const char *gibbs_help; 
  int greedy_flag;      
  const char *greedy_help; 
  char * generate_arg;  
  char * generate_orig; 
  const char *generate_help; 
  char * input_arg;     
  char * input_orig;    
  const char *input_help; 
  int itemsets_flag;    
  const char *itemsets_help; 
  char * limit_arg;     
  char * limit_orig;    
  const char *limit_help; 
  int memory_flag;      
  const char *memory_help; 
  int min_flag; 
  const char *min_help; 
  int number_arg;       
  char * number_orig;   
  const char *number_help; 
  char * output_arg;    
  char * output_orig;   
  const char *output_help; 
  int partition_flag;   
  const char *partition_help; 
  int significant_flag; 
  const char *significant_help; 
  int statistics_flag;  
  const char *statistics_help; 
  int test_flag;        
  const char *test_help; 
  int train_flag;       
  const char *train_help; 
  int verbose_arg;      
  char * verbose_orig;  
  const char *verbose_help; 
  float width_arg;      
  char * width_orig;    
  const char *width_help; 
  int gaussian_flag;    
  const char *gaussian_help; 
  char * genes_arg;     
  char * genes_orig;    
  const char *genes_help; 
  char * gene_id_column_arg;    
  char * gene_id_column_orig;   
  const char *gene_id_column_help; 
  char * gene_name_column_arg;  
  char * gene_name_column_orig; 
  const char *gene_name_column_help; 
  char * ignore_column_name_arg;        
  char * ignore_column_name_orig;       
  const char *ignore_column_name_help; 
  char * ignore_row_name_arg;   
  char * ignore_row_name_orig;  
  const char *ignore_row_name_help; 
  float lb_arg; 
  char * lb_orig;       
  const char *lb_help; 
  int log_flag; 
  const char *log_help; 
  int mc_arg;   
  char * mc_orig;       
  const char *mc_help; 
  float mh_arg; 
  char * mh_orig;       
  const char *mh_help; 
  float min_up_regulated_arg;   
  char * min_up_regulated_orig; 
  const char *min_up_regulated_help; 
  float max_down_regulated_arg; 
  char * max_down_regulated_orig;       
  const char *max_down_regulated_help; 
  int nb_arg;   
  char * nb_orig;       
  const char *nb_help; 
  int nc_arg;   
  char * nc_orig;       
  const char *nc_help; 
  int nm_arg;   
  char * nm_orig;       
  const char *nm_help; 
  int nd_arg;   
  char * nd_orig;       
  const char *nd_help; 
  int sd_arg;   
  char * sd_orig;       
  const char *sd_help; 
  int ns_arg;   
  char * ns_orig;       
  const char *ns_help; 
  char * oi_arg;        
  char * oi_orig;       
  const char *oi_help; 
  int pc_arg;   
  char * pc_orig;       
  const char *pc_help; 
  float pv_arg; 
  char * pv_orig;       
  const char *pv_help; 
  char * rf_arg;        
  char * rf_orig;       
  const char *rf_help; 
  char * row_name_column_arg;   
  char * row_name_column_orig;  
  const char *row_name_column_help; 
  int shamir_flag;      
  const char *shamir_help; 
  float st_arg; 
  char * st_orig;       
  const char *st_help; 
  float ub_arg; 
  char * ub_orig;       
  const char *ub_help; 
  int uniform_flag;     
  const char *uniform_help; 
  char * wf_arg;        
  char * wf_orig;       
  const char *wf_help; 
  unsigned int help_given ;     
  unsigned int version_given ;  
  unsigned int alpha_given ;    
  unsigned int anneal_given ;   
  unsigned int apriori_given ;  
  unsigned int classes_given ;  
  unsigned int config_given ;   
  unsigned int correlations_given ;     
  unsigned int flip_given ;     
  unsigned int filter_given ;   
  unsigned int gibbs_given ;    
  unsigned int greedy_given ;   
  unsigned int generate_given ; 
  unsigned int input_given ;    
  unsigned int itemsets_given ; 
  unsigned int limit_given ;    
  unsigned int memory_given ;   
  unsigned int min_given ;      
  unsigned int number_given ;   
  unsigned int output_given ;   
  unsigned int partition_given ;        
  unsigned int significant_given ;      
  unsigned int statistics_given ;       
  unsigned int test_given ;     
  unsigned int train_given ;    
  unsigned int verbose_given ;  
  unsigned int width_given ;    
  unsigned int gaussian_given ; 
  unsigned int genes_given ;    
  unsigned int gene_id_column_given ;   
  unsigned int gene_name_column_given ; 
  unsigned int ignore_column_name_given ;       
  unsigned int ignore_row_name_given ;  
  unsigned int lb_given ;       
  unsigned int log_given ;      
  unsigned int mc_given ;       
  unsigned int mh_given ;       
  unsigned int min_up_regulated_given ; 
  unsigned int max_down_regulated_given ;       
  unsigned int nb_given ;       
  unsigned int nc_given ;       
  unsigned int nm_given ;       
  unsigned int nd_given ;       
  unsigned int sd_given ;       
  unsigned int ns_given ;       
  unsigned int oi_given ;       
  unsigned int pc_given ;       
  unsigned int pv_given ;       
  unsigned int rf_given ;       
  unsigned int row_name_column_given ;  
  unsigned int shamir_given ;   
  unsigned int st_given ;       
  unsigned int ub_given ;       
  unsigned int uniform_given ;  
  unsigned int wf_given ;       
} ;

struct cmdline_parser_params
{
  int override; 
  int initialize; 
  int check_required; 
  int check_ambiguity; 
  int print_errors; 
} ;

extern const char *gengetopt_args_info_purpose;
extern const char *gengetopt_args_info_usage;
extern const char *gengetopt_args_info_help[];

int cmdline_parser (int argc, char **argv,
  struct gengetopt_args_info *args_info);

int cmdline_parser2 (int argc, char **argv,
  struct gengetopt_args_info *args_info,
  int override, int initialize, int check_required);

int cmdline_parser_ext (int argc, char **argv,
  struct gengetopt_args_info *args_info,
  struct cmdline_parser_params *params);

int cmdline_parser_dump(FILE *outfile,
  struct gengetopt_args_info *args_info);

int cmdline_parser_file_save(const char *filename,
  struct gengetopt_args_info *args_info);

void cmdline_parser_print_help(void);
void cmdline_parser_print_version(void);

void cmdline_parser_params_init(struct cmdline_parser_params *params);

struct cmdline_parser_params *cmdline_parser_params_create(void);

void cmdline_parser_init (struct gengetopt_args_info *args_info);
void cmdline_parser_free (struct gengetopt_args_info *args_info);

int cmdline_parser_required (struct gengetopt_args_info *args_info,
  const char *prog_name);


#ifdef __cplusplus
}
#endif /* __cplusplus */
#endif /* CMDLINE_H */