| /home/poirel/src/c++/biorithm/doc.h [code] | |
| /home/poirel/src/c++/biorithm/active-networks/active-networks.h [code] | Define the ActiveNetwork and SetOfActiveNetworks classes |
| /home/poirel/src/c++/biorithm/active-networks/doc.h [code] | Documentation for tools in the active-networks directory |
| /home/poirel/src/c++/biorithm/active-networks/netman.h [code] | Define the NetMan class |
| /home/poirel/src/c++/biorithm/active-networks/network-lego.h [code] | Define the NetworkLego and SetOfNetworkLegos classes |
| /home/poirel/src/c++/biorithm/apriori/doc.h [code] | Documentation for tools in the apriori directory |
| /home/poirel/src/c++/biorithm/biograph/doc.h [code] | Documentation for tools in the biograph directory |
| /home/poirel/src/c++/biorithm/bivoc/doc.h [code] | Documentation for tools in the bivoc directory |
| /home/poirel/src/c++/biorithm/enrich/doc.h [code] | Documentation for tools in the enrich directory |
| /home/poirel/src/c++/biorithm/gain/doc.h [code] | Documentation for tools in the gain directory |
| /home/poirel/src/c++/biorithm/gain/gain-algorithm.h [code] | Define the MyReallyAbstractGainAlgo, MyAbstractGainAlgo, MyOneVersusNoneGainAlgo, MyOneVersusNoneFunctionalFlowGainAlgo, MyOneVersusNoneHeavisideGainAlgo, MyOneVersusNoneShortestPathGainAlgo, MyOneVersusAllGainAlgo, MyOneVersusAllLocalGainAlgo, MyOneVersusAllHopfieldGainAlgo, MyOneVersusAllMincutGainAlgo, MyOneVersusAllSemiHierarchicalHopfieldGainAlgo, MyOneVersusAllHierarchicalHopfieldGainAlgo, MyOneVersusAllAbstractSVMGainAlgo, MyOneVersusAllLibSVMGainAlgo, MyOneVersusAllSVMLightGainAlgo, MyOneVersusAllSVMLightTransductiveGainAlgo, MyOneVersusAllSVMPerfGainAlgo, MyOneVersusAllSinkSourceGainAlgo, MyOneVersusNoneSinkSourceGainAlgo, MyOneVersusAllToNoneGainAlgo, MyOneVersusAllFunctionalFlowGainAlgo, and MyOneVersusAllGeneManiaGainAlgo classes |
| /home/poirel/src/c++/biorithm/gain/gain-state.h [code] | Define the MyGainState class |
| /home/poirel/src/c++/biorithm/gain/gain-traverse.h [code] | Define and implement the MyGainReduceDFSVisitor, MyGainReduce2DFSVisitor, MyGainPropagationBFSVisitor, and MyOneVersusAllGainAlgoPropagationBFSVisitor classes |
| /home/poirel/src/c++/biorithm/gain/gain.h [code] | Define the MyGainNode, MyGainGraph, MyGainParams, and MyGainOrf classes |
| /home/poirel/src/c++/biorithm/gain/rand_gather.h [code] | Define the rand_gather and rand_aggregate classes |
| /home/poirel/src/c++/biorithm/gain/reporter.h [code] | Define the Reporter class |
| /home/poirel/src/c++/biorithm/geewhiz/geewhiz-manager.h [code] | Define the GeewhizManager class |
| /home/poirel/src/c++/biorithm/libapriori/apriori.h [code] | Define the Apriori and AprioriWithComplement classes |
| /home/poirel/src/c++/biorithm/libapriori/dag.h [code] | Define and implement the DAG and DAGNode classes |
| /home/poirel/src/c++/biorithm/libapriori/itemset.h [code] | Define the Itemset class |
| /home/poirel/src/c++/biorithm/libexpression/binomial.h [code] | |
| /home/poirel/src/c++/biorithm/libexpression/cmdline.h [code] | The header file for the command line option parser generated by GNU Gengetopt version 2.22.4 http://www.gnu.org/software/gengetopt. DO NOT modify this file, since it can be overwritten |
| /home/poirel/src/c++/biorithm/libexpression/format.h [code] | |
| /home/poirel/src/c++/biorithm/libexpression/gaussian.h [code] | |
| /home/poirel/src/c++/biorithm/libexpression/gene.h [code] | |
| /home/poirel/src/c++/biorithm/libexpression/global.h [code] | |
| /home/poirel/src/c++/biorithm/libexpression/info.h [code] | |
| /home/poirel/src/c++/biorithm/libexpression/interval.h [code] | |
| /home/poirel/src/c++/biorithm/libexpression/kmeans.h [code] | |
| /home/poirel/src/c++/biorithm/libexpression/Mersennetwister.h [code] | |
| /home/poirel/src/c++/biorithm/libexpression/myperl.h [code] | |
| /home/poirel/src/c++/biorithm/libexpression/mystring.h [code] | |
| /home/poirel/src/c++/biorithm/libexpression/params.h [code] | |
| /home/poirel/src/c++/biorithm/libexpression/point.h [code] | |
| /home/poirel/src/c++/biorithm/libexpression/projcluster.h [code] | |
| /home/poirel/src/c++/biorithm/libexpression/random.h [code] | |
| /home/poirel/src/c++/biorithm/libexpression/read.h [code] | |
| /home/poirel/src/c++/biorithm/libfun/biofunction.h [code] | Define the BioFunction class |
| /home/poirel/src/c++/biorithm/libfun/enrichment-algorithm.h [code] | Define the LogHelper, FunctionalEnrichmentAlgorithm, RandomFunctionNetworkBasedEnrichmentAlgorithm, RandomUniverseNetworkBasedEnrichmentAlgorithm, HypergeometricAlgorithm, PAGEAlgorithm, GenGOAlgorithm, GroupHypAlgorithm, EdgeGroupHyp, FuncAssociate, SetCoverEnrichment, and FunctionalEnrichmentAlgorithmDispatcher classes |
| /home/poirel/src/c++/biorithm/libfun/GO.h [code] | Define the GOFunction and GeneOntology classes |
| /home/poirel/src/c++/biorithm/libfun/old-annotations.h [code] | Define the GOEvidenceCodes and MyAnnotations classes |
| /home/poirel/src/c++/biorithm/libgeewhiz/geewhiz.h [code] | Define the MyColor, FunctionType, NodeInfo, NodeType, EdgeType, and Geewhiz classes |
| /home/poirel/src/c++/biorithm/libgeewhiz/global.h [code] | Implement simple template functions for converting integers to strings and vice versa |
| /home/poirel/src/c++/biorithm/libgraph/bfs.h [code] | Define and implement the MyBFS, MyDefaultBFSVisitor, and MyComponentsBFSVisitor classes |
| /home/poirel/src/c++/biorithm/libgraph/dfs.h [code] | Define and implement the MyDFS, MyDefaultDFSVisitor, and MyComponentsDFSVisitor classes |
| /home/poirel/src/c++/biorithm/libgraph/dijkstra.h [code] | Define and implement the NodeElement, PrioritizeNodes, MyDefaultDijkstraVisitor, MyMainDijkstraVisitor, MyDijkstra, MyBCModifiedDijkstraVisitor, MyModifiedDijkstra, and MyEdgeBetweenessDijkstraVisitor classes |
| /home/poirel/src/c++/biorithm/libgraph/graph-global.h [code] | Implement simple helper template functions |
| /home/poirel/src/c++/biorithm/libgraph/graph.h [code] | Define the MyGraph, MyNode, MyEdge, and MyGraphInfo classes |
| /home/poirel/src/c++/biorithm/libgraph/mcode.h [code] | Define the MCODE class |
| /home/poirel/src/c++/biorithm/libgraph/treedex.h [code] | Define and implement the TreeDecomposition class |
| /home/poirel/src/c++/biorithm/libgraph/treewidth.h [code] | Define and implement the Treewidth class |
| /home/poirel/src/c++/biorithm/libutil/anneal.h [code] | Define and implement the MyAbstractAnnealState and MySimulatedAnnealer classes |
| /home/poirel/src/c++/biorithm/libutil/command-line.h [code] | Define and implement the GenericOptions class |
| /home/poirel/src/c++/biorithm/libutil/constants.h [code] | Define various constants |
| /home/poirel/src/c++/biorithm/libutil/enrichment.h [code] | Define and implement the EnrichmentRecord and Enrichment classes |
| /home/poirel/src/c++/biorithm/libutil/generic.h [code] | |
| /home/poirel/src/c++/biorithm/libutil/gnuplot.h [code] | Define and implement the GnuplotDataFile and GnuplotFileGenerator classes |
| /home/poirel/src/c++/biorithm/libutil/histogram.h [code] | Define the MyHistogram class |
| /home/poirel/src/c++/biorithm/libutil/ltqnorm.h [code] | Define methods for computing ltqnorm |
| /home/poirel/src/c++/biorithm/libutil/myiterator.h [code] | Define and implement the MyIterator class |
| /home/poirel/src/c++/biorithm/libutil/poorperl.h [code] | Define and implement various poor man's perl match-, subst-, split-like functions |
| /home/poirel/src/c++/biorithm/libutil/profiler.h [code] | Define and implement the my_Time class |
| /home/poirel/src/c++/biorithm/process-go/doc.h [code] | Documentation for tools in the process-go directory |
| /home/poirel/src/c++/biorithm/reconcile/doc.h [code] | Documentation for tools in the reconcile directory |
| /home/poirel/src/c++/biorithm/reconcile/reconciliation-algorithms.h [code] | Define the AbstractSingleReconciliation, GeneMANIA, HeatKernel, PageRank, SinkSource, and Vanilla classes |
| /home/poirel/src/c++/biorithm/truth-tables/BinaryMatrix.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/BSetMap.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/BSEvaluator.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/ChisqFilter.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/cnull.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/dag.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/doc.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/DualMiner.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/Evaluator.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/Filter.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/FilterPool.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/FuncEquivFilter.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/GenericLattice.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/HLevItemSetMap.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/HPosMiner.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/ItemSet.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/Itemset.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/ItemSetCompare.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/ItemsetCompare.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/ItemsetLevel.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/ItemSetMap.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/ItemSetTree.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/Lattice.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/LatticeFilter.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/LatticeMiner.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/LevelwiseMiner.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/LevItemSetMap.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/MafiaMiner.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/Miner.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/Monitorable.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/PascalsTriangle.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/PatternBounder.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/PDistFilter.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/PosLattice.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/PosMiner.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/Rotor.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/SGraphFilter.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/SPMiner.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/StandardMiner.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/TopKMiner.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/TreeMiner.h [code] | |
| /home/poirel/src/c++/biorithm/truth-tables/TruthMatrix.h [code] | |
| /home/poirel/src/c++/biorithm/xmotif/classifier.h [code] | |
| /home/poirel/src/c++/biorithm/xmotif/database.h [code] | |
| /home/poirel/src/c++/biorithm/xmotif/doc.h [code] | |
| /home/poirel/src/c++/biorithm/xmotif/Enrichment.h [code] | Enrichment Class |
| /home/poirel/src/c++/biorithm/xmotif/greedySetCover.h [code] | |
| /home/poirel/src/c++/biorithm/xmotif/itemset.h [code] | |
| /home/poirel/src/c++/biorithm/xmotif/itemsetEnrichment.h [code] | |
| /home/poirel/src/c++/biorithm/xmotif/motifDataset.h [code] | |
| /home/poirel/src/c++/biorithm/xmotif/readfile.h [code] | |
| /home/poirel/src/c++/biorithm/xmotif/xmotif.h [code] | |
1.7.6.1
