This class implements the GeneMANIA algorithm. More...

Inheritance diagram for GeneMANIA:

Public Member Functions
	GeneMANIA (MyGraph &graph, MyPointSet &weights, double q, double maxIters, double epsilon, string output)
	GeneMANIA (vector< MyGraph > &graphs, double q, double maxIters, double epsilon, string outputPrefix)
virtual	~GeneMANIA ()
	Destructor.
virtual string	getName ()
	Return the name of the GeneMANIA algorithm.
Protected Member Functions
virtual void	_updateNodeWeightA (MyNode node)
	Update the weight of a node in the current graph according to the GeneMANIA update function.
virtual pair< double, double >	_computeEnergy ()
	Compute the node sum and edge sum from the GeneMANIA energy function.

Detailed Description

This class implements the GeneMANIA algorithm.

Constructor & Destructor Documentation

Constructor for running the algorithm on a single network with multiple initial weights samples.

Parameters:

[in]	graph	The network on which to operate.
[in]	weights	The samples containing initial node weights.
[in]	q	The parameter q used by the algorithm.
[in]	maxIters	The maximum number of iterations to run the iterative reconciliation algorithms.
[in]	epsilon	A small value that defines part of the convergence criteria.
[in]	outputA	string to prepend to all output files.

Constructor for running the algorithm on multiple networks with no initial weights.

Parameters:

[in]	graphs	The networks on which to operate.
[in]	q	The parameter q used by the algorithm.
[in]	maxIters	The maximum number of iterations to run the iterative reconciliation algorithms.
[in]	epsilon	A small value that defines part of the convergence criteria.
[in]	output	A string to prepend to all output files.

The documentation for this class was generated from the following files: