Here is a list of all documented class members with links to the class documentation for each member:

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• _annotations : FunctionalEnrichmentAlgorithm
• _category : FunctionalEnrichmentAlgorithm
• _checkFinished() : HeatKernel , AbstractSingleReconciliation
• _clusterGenes : FunctionalEnrichmentAlgorithm
• _computeEnergy() : Vanilla , GeneMANIA , AbstractSingleReconciliation , PageRank
• _currGraphA : AbstractSingleReconciliation
• _currNodeWeightsA : AbstractSingleReconciliation
• _currSampleA : AbstractSingleReconciliation
• _EPSILON : AbstractSingleReconciliation
• _go : FunctionalEnrichmentAlgorithm
• _graphs : AbstractSingleReconciliation
• _initialiseNodeWeights() : AbstractSingleReconciliation
• _initialNodeWeightsA : AbstractSingleReconciliation
• _logHelper : FunctionalEnrichmentAlgorithm
• _MAX_ITERS : AbstractSingleReconciliation
• _nodeAliases : NetMan
• _openOutputFiles() : NetMan
• _outputPrefix : AbstractSingleReconciliation
• _prevNodeWeightsA : AbstractSingleReconciliation
• _printNodeWeights() : AbstractSingleReconciliation
• _q : AbstractSingleReconciliation
• _runAlgorithmOnceA() : SinkSource , AbstractSingleReconciliation
• _runForGraphs() : AbstractSingleReconciliation
• _runForWeights() : AbstractSingleReconciliation
• _t : HeatKernel
• _universeGenes : FunctionalEnrichmentAlgorithm
• _updateNodeWeightA() : PageRank , AbstractSingleReconciliation , SinkSource , HeatKernel , Vanilla , GeneMANIA
• _weights : AbstractSingleReconciliation