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• _checkFinished() : AbstractSingleReconciliation , HeatKernel
• _computeEnergy() : PageRank , Vanilla , AbstractSingleReconciliation , GeneMANIA
• _initialiseNodeWeights() : AbstractSingleReconciliation
• _openOutputFiles() : NetMan
• _printNodeWeights() : AbstractSingleReconciliation
• _runAlgorithmOnceA() : AbstractSingleReconciliation , SinkSource
• _runForGraphs() : AbstractSingleReconciliation
• _runForWeights() : AbstractSingleReconciliation
• _updateNodeWeightA() : SinkSource , PageRank , Vanilla , AbstractSingleReconciliation , GeneMANIA , HeatKernel