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• PAGEAlgorithm() : PAGEAlgorithm
• PageRank() : PageRank
• PDistFilter() : PDistFilter
• pipeline() : MyReallyAbstractGainAlgo , MyAbstractGainAlgo< StateType >
• plotExpressionCorrelationsHistogram() : NetMan
• plotExpressionValuesHistogram() : NetMan
• PosLattice() : PosLattice
• PosMiner() : PosMiner
• postProcess() : NetMan
• print() : DAG< NodeType > , Itemset , MyPointSet , MyAnnotations , Graphwhiz::EdgeType , MyDensestSubgraphAnnealState , MyGraph , MyAbstractAnnealState , MyHistogram , MyGainState< StateType > , DAG< NodeType > , MyGainDAGDistanceType
• printAllPairsShortestPathDistances() : MyGraph
• printBinaryMatrix() : SetOfNetworkLegos
• printClosedLattice() : SetOfNetworkLegos
• printColumns() : Itemset
• printComparisonPredictionEvaluationROCCurves() : Reporter
• printConditions() : ActiveNetwork
• printCorrelations() : MyPointSet
• printCorrelationsHistogram() : MyPointSet
• printCurveDataFromCV() : Reporter
• printCVResults() : Reporter
• printDot() : Graphwhiz::Geewhiz
• printECWeightedCurveDataFromCV() : Reporter
• printEdgeEnrichedFunctions() : ActiveNetwork
• printEdgeEnrichments() : ActiveNetwork
• printEdges() : MyGraph
• printEdgesItemset() : ActiveNetwork
• printEdgeTypeCounts() : MyGraph
• printEdgeWeightsHistograms() : SetOfActiveNetworks
• printEnrichmentResult() : RandomFunctionNetworkBasedEnrichmentAlgorithm , RandomUniverseNetworkBasedEnrichmentAlgorithm
• printEnrichmentResults() : PAGEAlgorithm , FuncAssociate , FunctionalEnrichmentAlgorithm , RandomFunctionNetworkBasedEnrichmentAlgorithm , RandomUniverseNetworkBasedEnrichmentAlgorithm , HypergeometricAlgorithm , GenGOAlgorithm , GroupHypAlgorithm , EdgeGroupHyp , SetCoverEnrichment
• printFunctionDepths() : GeneOntology
• printFunctionDescendants() : GeneOntology
• printGraph() : Itemset
• printInvocation() : MyGainParams
• printItemset() : ActiveNetwork
• printItemsets() : Apriori
• printItemsetsGraph() : Apriori
• printItemsetStatistics() : Apriori
• printLattice() : SetOfNetworkLegos
• printNodeEnrichedFunctions() : ActiveNetwork
• printNodeEnrichments() : SetOfActiveNetworks , ActiveNetwork
• printNodes() : MyGraph
• printNodeWeightsHistograms() : SetOfActiveNetworks
• printNumAnnotationsPerFunction() : MyAnnotations
• printPredictionEvaluationROCCurves() : Reporter
• printPredictionEvaluations() : Reporter
• printPredictionEvaluationSummary() : Reporter
• printPredictions() : Reporter
• printRelationships() : GeneOntology
• printRows() : Itemset
• printStatistics() : MyReallyAbstractGainAlgo , MyOneVersusAllGainAlgo , MyOneVersusAllSemiHierarchicalHopfieldGainAlgo , ActiveNetwork
• printStatisticsComponents() : ActiveNetwork
• printWithName() : MyAnnotations
• process() : NetMan
• processCategory() : MyGainParams
• processComputedActiveNetworks() : NetMan
• processFunctionSubgraphs() : NetMan
• processNetwork() : NetMan
• processNetworkLegos() : NetMan
• processNodeEnrichments() : SetOfActiveNetworks
• pruneItemSets() : HPosMiner , TreeMiner , PosMiner