Class Hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

• AbstractSingleReconciliation
  • GeneMANIA
  • HeatKernel
  • PageRank
  • SinkSource
  • Vanilla
• anid_index
• Apriori
  • AprioriWithComplement
• PosLattice::assoc
• assoc
• GenericLattice::assoc
• BinaryMatrix
• BioFunction
  • GOFunction
• cmdline_parser_params
• combineAND
• combineOR
• compareComplexes
• compareEntropies
• TreeDecomposition::compareFillInRatioValues
• TreeDecomposition::compareFillInValues
• compareIntsLexicographically
• compareMaximumSpanningTree
• compareMinimumSpanningTree
• compareMyCoords
• compareMyIntervals
• compareMyPQNodes
• compareMyPQNodesDense
• compareRankedCoords
• ItemSetTree< t >::ConstIterator
• DAG< NodeType >
• DAG< SDAGNode >
  • SDAG
• DAGNode< NodeInfo >
• DAGNode< NetworkLego >
  • SDAGNode
• DetailedCVResult
• distance_Euclidean
• distance_squared_Euclidean
• DummyClass
• Graphwhiz::EdgeType
• Enrichment< S, T >
• EnrichmentPostprocess
• EnrichmentRecord< S, T >
• eqis
• eqstr
• evaluation_summaries_algorithm_index
• Evaluator
  • BSEvaluator
• exponentNegativeTransform
• Filter
  • ChisqFilter
  • FuncEquivFilter
  • LatticeFilter
  • PDistFilter
  • SGraphFilter
• FunctionalAnnotation
• FunctionalEnrichmentAlgorithm
  • EdgeGroupHyp
  • FuncAssociate
  • GenGOAlgorithm
  • GroupHypAlgorithm
  • HypergeometricAlgorithm
  • PAGEAlgorithm
  • RandomFunctionNetworkBasedEnrichmentAlgorithm
  • RandomUniverseNetworkBasedEnrichmentAlgorithm
  • SetCoverEnrichment
• FunctionalEnrichmentAlgorithmDispatcher
• Graphwhiz::FunctionType
• Graphwhiz::Geewhiz
• GeewhizManager
• GeneOntology
• GenericOptions
• gengetopt_args_info
• GnuplotDataFile
• GnuplotFileGenerator
• GOEvidenceCodes
• greedySetCover
• hash< T >
• hash< const ItemSet * >
• hash< const Itemset * >
• hash< const ItemSet >
• hash< const unsigned int * >
• __gnu_cxx::hash< double >
• __gnu_cxx::hash< MyString >
• __gnu_cxx::hash< string >
• hassoc
• HypergeometricAlgorithm::hypergeometricEnrichmentResult
• inverseNormalPvalueTransform
• Itemset
• itemset
• ItemSet
• ItemsetLevel< t >
• ItemSetMap< t >
• ItemsetRange
• ItemSetTree< t >
• ItemSetTree< t >::Iterator
• Lattice
  • GenericLattice
  • PosLattice
• LevItemSetMap< t >
• LogHelper
• ltis< T >
• ltis< const ItemSet * >
• ltis< const Itemset * >
• ltis< const ItemSet >
• ltstr
• MCODE
• Monitorable
  • FilterPool
  • Miner
    • LatticeMiner
      • DualMiner
      • StandardMiner
      • TopKMiner
    • LevelwiseMiner
      • HPosMiner
      • PosMiner
      • SPMiner
      • TreeMiner
    • MafiaMiner
• motif
• motifDataset
  • database
  • readfile
• MTRand
  • MyRand< MyNT >
• my_Time
• MyAbstractAnnealState
  • MyDensestSubgraphAnnealState
    • MyDensestSubgraphConnectedBruteForceAnnealState
• MyAbstractGraphModification
  • MyGraphEdgeDeletion
  • MyGraphEdgeInsertion
  • MyGraphNodeDeletion
  • MyGraphNodeInsertion
• MyAffyFileFormat
• MyAnnotations
• MyBFS< Graph, BFSVisitor >
• MyBox
• MyCluster
• MyClusterLess
• MyClusterMore
• MyClusterParams
• MyClusterSet
• Graphwhiz::MyColor
• MyContext
• MyDefaultBFSVisitor
  • MyComponentsBFSVisitor
  • MyEndsBFSVisitor
  • MyOneVersusAllGainAlgoPropagationBFSVisitor
• MyDefaultDFSVisitor
  • MyComponentsDFSVisitor
  • MyGainReduce2DFSVisitor
• MyDefaultDijkstraVisitor
  • MyMainDijkstraVisitor
    • MyBCModifiedDijkstraVisitor
    • MyEdgeBetweenessDijkstraVisitor
• MyDFS< Graph, DFSVisitor >
• MyDijkstra< Graph, DijkstraVisitor >
• MyEdge
• MyEdgeBetweenessDijkstra< Graph, DijkstraVisitor >
• SetOfEdgeTypeWeights< GroupType >::MyEdgeTypeWeight
• MyGainDAGDistanceType
• MyGainMinCutInfo
• MyGainOrf
• MyGainParams
• MyGainState< StateType >
• MyGainStateInfo< StateType >
• MyGenericParams
  • MyEvalGainParams
• MyGraph
  • ActiveNetwork
    • NetworkLego
  • MyGainGraph
• MyGraphInfo
• SetOfGroupedNodes< GroupType >::MyGroupedNode
• MyHistogram
• MyInfo
  • MyAffyGene
  • MyPointInfo
• MyInterval
  • MyDimensionInterval
  • MySignificantInterval
• MyIterator< T >
• MyIterator< BioFunction >
  • MyAnnotations::BioFunctionsIteratorMultiIndex
• MyIterator< MyNode >
  • MyGraph::MyNodeIterator
• MyIterator< MyPointSet >
  • MySetOfPointSetsIterator
• MyIterator< Object >
  • MyGraph::EdgeObjectIterator< Object, ObjectPtr >
  • MyGraph::NodeObjectIterator< Object, ObjectPtr >
  • MyNode::EdgeObjectIterator< Object, ObjectPtr >
• MyIterator< string >
  • MyAnnotations::BioFunctionsConstIterator
  • MyAnnotations::BioFunctionsIterator
• MyKeyClusterParams
• MyKMeansAlgo< MyKMeansPointType >
• MyKMeansClusterType< MyPointType >
• MyKMeansInfo
• MyModifiedDijkstra< Graph, DijkstraVisitor >
• MyNode
• TreeDecomposition::MyNodeFillInRatioPQNode
• MyOneVersusAllToNoneGainAlgo
• MyOneVersusNoneGeneManiaGainAlgo
• MyOneVersusNoneHeavisideGainAlgo
• MyOneVersusNoneShortestPathGainAlgo
• MyPointSet
• MyReallyAbstractGainAlgo
  • MyAbstractGainAlgo< StateType >
  • MyAbstractGainAlgo< MyGainTriStateType >
    • MyOneVersusAllGainAlgo
      • MyOneVersusAllAbstractSVMGainAlgo
        • MyOneVersusAllLibSVMGainAlgo
        • MyOneVersusAllSVMLightGainAlgo
          • MyOneVersusAllSVMLightTransductiveGainAlgo
      • MyOneVersusAllGeneManiaGainAlgo
      • MyOneVersusAllHopfieldGainAlgo
        • MyOneVersusAllSemiHierarchicalHopfieldGainAlgo
          • MyOneVersusAllHierarchicalHopfieldGainAlgo
      • MyOneVersusAllLocalGainAlgo
      • MyOneVersusAllMincutGainAlgo
      • MyOneVersusAllSinkSourceGainAlgo
        • MyOneVersusNoneSinkSourceGainAlgo
      • MyOneVersusNoneGainAlgo
        • MyOneVersusNoneFunctionalFlowGainAlgo
        • MyOneVersusNoneLocalGainAlgo
• MySetOfPointSets
• MySimulatedAnnealer< AnnealState >
• MyString
• MySubsetChange
• MyUniqueRandom< MyNT >
• MyWidthRange
• negativeLogTransform
• NetMan
• NetworkLegoInActiveNetwork
• nlid_anid_index
• nlid_index
• ItemSetTree< t >::node
• NodeElement
• Graphwhiz::NodeInfo
• Graphwhiz::NodeType
• oneMinusExponentNegativeTransform
• oneMinusTransform
• pa_nodeid_index
• pa_zscore_index
• passoc
• PatternBounder
  • KKBounder
    • ImprovedBounder
• Point_d< NT >
  • MyPoint
• PPNodeStats
• Prediction
• PredictionDetails
• PredictionEvaluation
• PredictionEvaluationSummary
• PrioritizeNodes
• ProbeInfo
• rand_aggregate
• rand_gather
• RankedCoord
• Reporter
• Rotor
• sampleSorter
• SetOfActiveNetworks
  • SetOfNetworkLegos
• SetOfEdgeTypeWeights< GroupType >
• SetOfGroupedNodes< GroupType >
• sort_hyp_enrich_results_less
• sort_pair_greater
• sort_pair_second_greater
• toRightMyIntervals
• TreeDecomposition
• Treewidth
• TreeDecomposition::TreeWidthNodeSelector
  • TreeDecomposition::TreeWidthNodeSelectorMinDegree
  • TreeDecomposition::TreeWidthNodeSelectorMinFillIn
    • TreeDecomposition::TreeWidthNodeSelectorMinFillInRatio
• TruthMatrix