A struct to store information on the evaluation of a prediction. ! More...

#include <reporter.h>

Public Member Functions
	PredictionEvaluation (string g="", string f="", string a="", MyNT c=0)
bool	isClosestFunctionInitialised () const
	Has the closest function been initialised?
bool	isClosestExperimentallyAnnotatedFunctionInitialised () const
	Has the closest experimentally-verifying function been initialised?
bool	isVerified () const
	Is this prediction verified by the new set of annotations?
bool	isExperimentallyVerified () const
	Is this prediction verified by an experimentally-derived annotation in the new set of annotations?
void	updateClosestFunction (string f, int up, int down, bool experimentalEC=false)
	Update the closest function to the predicted function.
Public Attributes
string	_gene
string	_function
string	_algorithm
MyNT	_confidence
unsigned int	_rankOverall
unsigned int	_rankFunction
string	_closestFunction
string	_closestExperimentallyAnnotatedFunction
MyGainDAGDistanceType	_distance
MyGainDAGDistanceType	_distanceToExperimentallyAnnotatedFunction

Detailed Description

A struct to store information on the evaluation of a prediction. !

Member Function Documentation

void PredictionEvaluation::updateClosestFunction	(	string	f,
		int	up,
		int	down,
		bool	experimentalEC = `false`
	)

Update the closest function to the predicted function.

Parameters:

[in]	f,a	string denoting the candidate closest function.
[in]	up,the	distance to travel up the GO DAG to go from the predicted function to f.
[in]	down,the	distance to travel down the GO DAG to go from the predicted function to f.
[in]	experimentalEC,true	if the evidence code for the annotation of the gene by f is experimental. Either (but not both) of up or down can be negative.

The documentation for this struct was generated from the following files: