T. M. Murali's Research Collaborators
Our research relies on strong collaborations with life scientists, mathematicians, biophysicists, and computer scientists. I co-direct the ICTAS Center for Systems Biology of Engineered Tissues. I am the associate director of the Computational Tissue Engineering interdisciplinary graduate education program. I am also a member of MENGO, a Microbial ENergy processes Gene Ontology project.
| Active Collaborators | ||
| Richard Helm | Department of Biochemistry, Virginia Tech | Signaling pathways in bioengineered tissues |
| Shiv D. Kale | Biocomplexity Institute, Virginia Tech | PathLinker, GraphSpace |
| John Kececiouglu | Department of Computer Science, University of Arizona | Signaling hypergraphs |
| Simon Kasif | Department of Biomedical Engineering, Boston University | Gene function prediction (GAIN, Art, TE and Systems Biology) |
| Kurt Luther | Department of Computer Science, Virginia Tech | Crowdsourcing of network layouts, GraphSpace |
| Jean Peccoud | Dept. of Chemical and Biological Engineering, Colorado State University | Combining top-down and bottom-up models in systems biology (Model validation, GraphSpace) |
| Padma Rajagopalan | Department of Chemical Engineering, Virginia Tech | Systems biology of engineered 3-D cellular architectures (CS vs HM, CBPLNs, TE and Systems Biology, 3-cell liver mimics) |
| John Tyson | Department of Biological Sciences, Virginia Tech | Combining top-down and bottom-up models in systems biology (LINKER, START to FINISH, Model validation, GraphSpace) |
| Other Collaborators | ||
| Hans Bohnert | Department of Plant Biology, UIUC | Plant stress response (CO2) |
| Ruth Grene | Department of Plant Pathology, Virginia Tech | Plant stress response (XcisClique, CO2) |
| Lenwood Heath | Department of Computer Science, Virginia Tech | Plant stress response (XcisClique, CO2) |
| Michael G. Katze | Department of Microbiology, University of Washington | HIV dependency factors |
| Alexey Onufriev | Department of Computer Science, Virginia Tech | Ligand diffusion pathways in proteins (myoglobin) |
| Naren Ramakrishnan | Department of Computer Science, Virginia Tech | Compositional data mining (CDM), Pursuit of truthiness |
| Bruno Sobral | Virginia Bioinformatics Institute, Virginia Tech | Host-pathogen protein interaction networks (prediction, landscape, PIG, bacterial-human, human-HIV) |
| Brett Tyler | Virginia Bioinformatics Institute, Virginia Tech | Gene function prediction (HDFs), pathway analysis (perturbation) |
T. M. Murali (murali at cs dot vt dot edu) Last modified: Sun Jun 25 15:06:29 EDT 2017