, including all inherited members.
addUnannotated(int numS, int numT) | Enrichment< S, T > | |
check(double value, LIBENRICHMENT_TEST_TYPE test, double alpha, unsigned int numTests, unsigned int rank) | Enrichment< S, T > | |
check(vector< EnrichmentRecord< S, T > > &in, vector< EnrichmentRecord< S, T > > &out, LIBENRICHMENT_TEST_TYPE test, double alpha) | Enrichment< S, T > | |
clear() | Enrichment< S, T > | |
ClearResults(void) | Enrichment< S, T > | |
ClearUniverse(void) | Enrichment< S, T > | |
computeHyperGeometricProbability(int globTotal, int globTrue, int locTotal, int locTrue) | Enrichment< S, T > | |
correct(double value, LIBENRICHMENT_TEST_TYPE test, double alpha, unsigned int numTests, unsigned int rank) | Enrichment< S, T > | |
Enrich(double threshold) | Enrichment< S, T > | |
Enrichment() | Enrichment< S, T > | |
Enrichment() (defined in Enrichment< S, T >) | Enrichment< S, T > | |
FormSettings(string Db, string Host, string User, string Passwd) | Enrichment< S, T > | |
functionFile(string fileName) | Enrichment< S, T > | |
getEnrich_f2p(void) | Enrichment< S, T > | |
getEnrich_f2val(void) | Enrichment< S, T > | |
getEnrich_p2f(void) | Enrichment< S, T > | |
getEnrichments(set< S > &in, vector< EnrichmentRecord< S, T > > &out) | Enrichment< S, T > | |
getEnrichmentsGSEA(set< S > &in, vector< EnrichmentRecord< S, T > > &out) (defined in Enrichment< S, T >) | Enrichment< S, T > | |
getUni_f2p(void) | Enrichment< S, T > | |
getUni_p2f(void) | Enrichment< S, T > | |
InsertEnrich(void) | Enrichment< S, T > | |
isPair(const S &s, const T &t) const | Enrichment< S, T > | |
loadPairs(const vector< pair< S, T > > &in) | Enrichment< S, T > | |
loadPairs(const map< S, set< T > > &in) | Enrichment< S, T > | |
LocusIndex(vector< long > LL) | Enrichment< S, T > | |
SetBicluster(long clusId) | Enrichment< S, T > | |
SetQuery(vector< long > Qry) | Enrichment< S, T > | |
SetUniverse(vector< long > Uni) | Enrichment< S, T > | |
~Enrichment() (defined in Enrichment< S, T >) | Enrichment< S, T > | |