GenGOAlgorithm Member List

This is the complete list of members for GenGOAlgorithm, including all inherited members.

_annotations	FunctionalEnrichmentAlgorithm	[protected]
_category	FunctionalEnrichmentAlgorithm	[protected]
_clusterGenes	FunctionalEnrichmentAlgorithm	[protected]
_go	FunctionalEnrichmentAlgorithm	[protected]
_logHelper	FunctionalEnrichmentAlgorithm	[protected, static]
_universeGenes	FunctionalEnrichmentAlgorithm	[protected]
computeEnrichedFunctions(const set< string > &functionsToProcess)	GenGOAlgorithm	[virtual]
computeEnrichmentForFunction(const string funcType, const string funcId)	GenGOAlgorithm	[inline, virtual]
FunctionalEnrichmentAlgorithm(const set< MyNodeId > &clusterGenes, const set< MyNodeId > &universeGenes, MyAnnotations &annotations, const GeneOntology &go, string category)	FunctionalEnrichmentAlgorithm
FunctionalEnrichmentAlgorithm(MyAnnotations &annotations, const GeneOntology &go, string category)	FunctionalEnrichmentAlgorithm	[inline]
GenGOAlgorithm(const MyGraph &clusterGraph, const MyGraph &universeGraph, MyAnnotations &annotations, const GeneOntology &go, string category, double p, double q, double penalty)	GenGOAlgorithm
printEnrichmentResults(ostream &ostr)	GenGOAlgorithm	[virtual]
~FunctionalEnrichmentAlgorithm()	FunctionalEnrichmentAlgorithm	[inline, virtual]
~GenGOAlgorithm()	GenGOAlgorithm	[inline, virtual]