MyAbstractGainAlgo< StateType > Member List

This is the complete list of members for MyAbstractGainAlgo< StateType >, including all inherited members.

_annotations (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[protected]
_currentFunction (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[protected]
_cutNodes (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[protected]
_go (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[protected]
_graph (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[protected]
_initialStateTypes (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[protected]
_nodesByInitialStateType (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[protected]
_nodesByRealStateType (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[protected]
_params (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[protected]
_realStateTypes (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[protected]
_reporter (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[protected]
_states (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[protected]
computeCrossValidationResults(const BioFunction &function, const MyNodeIdList &cvNodes)=0	MyAbstractGainAlgo< StateType >	[pure virtual]
computeCut(MyNodeIdList &nodesToAnnotate, MyNodeIdSet &cutNodes)	MyAbstractGainAlgo< StateType >	[inline, virtual]
computePredictions(const BioFunction &function, const MyNodeIdList &nodesToAnnotate, MyNodeIdList &predictedNodes)=0	MyAbstractGainAlgo< StateType >	[pure virtual]
computeState(MyNode &node)=0	MyAbstractGainAlgo< StateType >	[pure virtual]
constructCrossValidationLists(vector< MyNodeIdList > &cvLists)=0	MyAbstractGainAlgo< StateType >	[pure virtual]
crossValidate(const BioFunction &function) (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[virtual]
evaluatePredictions(MyAnnotations &newAnnotations)	MyAbstractGainAlgo< StateType >	[virtual]
getName()=0	MyAbstractGainAlgo< StateType >	[pure virtual]
hasConverged(const MyNodeIdList &nodesToAnnotate)=0 (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[pure virtual]
initialiseAlgorithm()	MyReallyAbstractGainAlgo	[inline, virtual]
initialiseEdgeWeights(const BioFunction &function) (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[inline, virtual]
initialiseEdgeWeightsCutoff(const BioFunction &function) (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[inline, virtual]
initialiseEdgeWeightsDepth(const BioFunction &function) (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[inline, virtual]
initialiseNodeStates(const BioFunction &function, MyNodeIdList &nodesToAnnotate)=0 (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[pure virtual]
maskNodeStates(const MyNodeIdList &nodes)=0	MyAbstractGainAlgo< StateType >	[pure virtual]
MyAbstractGainAlgo(MyGainGraph &g, MyAnnotations &a, MyGainParams &p, Reporter &r, GeneOntology *go=NULL) (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[inline]
pipeline(const BioFunction &function)	MyAbstractGainAlgo< StateType >	[virtual]
predict(const BioFunction &function) (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[virtual]
printStatistics(ostream &statsStream)	MyReallyAbstractGainAlgo	[inline, virtual]
removeUnpredictableNodes(const MyNodeIdSet &unpredictableNodes, MyNodeIdList &oldNodes) (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[inline, virtual]
run(const MyNodeIdList &nodesToAnnotate)=0 (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[pure virtual]
setCrossValidationList(MyNodeIdList &nodesToAnnotate, const MyNodeIdList &cvList)	MyAbstractGainAlgo< StateType >	[virtual]
visualiseCrossValidation(const BioFunction &currentFunction)	MyAbstractGainAlgo< StateType >	[virtual]
visualiseCut(const BioFunction &currentFunction, MyNodeIdList &predictedNodes)	MyAbstractGainAlgo< StateType >	[virtual]
visualisePredictions(const BioFunction &currentFunction, MyNodeIdList &nodesToAnnotate) (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[virtual]
~MyAbstractGainAlgo() (defined in MyAbstractGainAlgo< StateType >)	MyAbstractGainAlgo< StateType >	[inline, virtual]