, including all inherited members.
| addCV(string function, MyGainCVResult result, MyNT threshold, string algorithm="Hopfield") | Reporter | |
| addCV(string gene, string function, MyGainAnnotationType correctState, MyGainAnnotationType predictedState, MyNT correctStateConfidence, MyNT predictionConfidence, string algorithm="Hopfield") | Reporter | |
| addPrediction(string gene, string function, MyNT prob, MyNT input, MyNT threshold, string algorithm="Hopfield") (defined in Reporter) | Reporter | |
| addPredictionCutBasedConfidence(string gene, string function, MyNT confidence, MyNT threshold, string algorithm="Hopfield") | Reporter | |
| checkTruePathRuleForPredictions(string algorithm, MyAnnotations &annotations, const GeneOntology &go, ostream &ostr, map< string, set< string > > &tprViolations) | Reporter | |
| clear() (defined in Reporter) | Reporter | |
| comparePredictions(string algo1, string algo2, ostream &ostr) | Reporter | |
| computePredictionRanks(string algo, MyAnnotations &differentAnnotations, GeneOntology &go) | Reporter | |
| evaluatePredictions(string algo, MyAnnotations ¤tAnnotations, MyAnnotations &newAnnotations, GeneOntology &go) | Reporter | |
| evaluatePredictionsForROCCurvesUsingRanks(string algo, MyAnnotations &differentAnnotations, GeneOntology &go) | Reporter | |
| getAlgorithms(set< string > &algorithms) | Reporter | |
| getGenesWithPredictions(string algo, set< string > &genes) | Reporter | |
| printComparisonPredictionEvaluationAUCScatterPlots(const set< string > &algorithms, string outputDir, MyAnnotations &annotations) (defined in Reporter) | Reporter | |
| printComparisonPredictionEvaluationROCCurves(const set< string > &algorithms, string outputDir, MyAnnotations &annotations, const GeneOntology &go) | Reporter | |
| printCurveDataFromCV(ostream &out, GeneOntology &go, set< BioFunction > functions=set< BioFunction >(), string extra="") | Reporter | |
| printCVResults(ostream &cvfstr, bool flush=1, const BioFunction *functionToPrint=NULL) | Reporter | |
| printDetailedCVResults(ostream &dcvfstr, bool flush=1) (defined in Reporter) | Reporter | |
| printECWeightedCurveDataFromCV(ostream &out, GeneOntology &go, MyAnnotations &annotations, set< BioFunction > functions=set< BioFunction >(), string extra="") | Reporter | |
| printPredictionEvaluationROCCurves(ostream &ostr) | Reporter | |
| printPredictionEvaluations(ostream &ostr, GeneOntology *go=NULL) | Reporter | |
| printPredictionEvaluationSummary(ostream &ostr) | Reporter | |
| printPredictions(ostream &predfstr, int numPredictionsToPrintPerFunction, bool flush=1, const BioFunction *functionToPrint=NULL) | Reporter | |
| readDetailedCVResults(string predFile, const set< string > *onlyFunctions=NULL, string convertFunction="") | Reporter | |
| readGeneUniverse(string guFile, set< string > &universe) | Reporter | |
| readPredictions(string predFile, set< string > *onlyFunctions=NULL, string convertFunction="") | Reporter | |
| Reporter() (defined in Reporter) | Reporter | [inline] |
| Reporter(string outDir, string cmdLine) (defined in Reporter) | Reporter | [inline] |
| setExperimentName(string dataset) | Reporter | [inline] |
| ~Reporter() (defined in Reporter) | Reporter | [inline, virtual] |
1.7.6.1
