, including all inherited members.
| _addAlias(string probe, string alias) (defined in motifDataset) | motifDataset | [inline, protected] |
| _addInfo(string probe, string symbol, string name) (defined in motifDataset) | motifDataset | [inline, protected] |
| _aliasesToProbes (defined in motifDataset) | motifDataset | [protected] |
| _probesToAliases (defined in motifDataset) | motifDataset | [protected] |
| _probesToInfo (defined in motifDataset) | motifDataset | [protected] |
| _probeURL (defined in motifDataset) | motifDataset | [protected] |
| classes() (defined in database) | database | [virtual] |
| classToExperiments() (defined in database) | database | [virtual] |
| computeClassIndexForSamples(const set< int > &columnSet, double frac=1) const =0 | motifDataset | [pure virtual] |
| computeClassNameForSamples(const set< int > &columnSet, double frac=1) const =0 | motifDataset | [pure virtual] |
| database(int) (defined in database) | database | |
| database(string) (defined in database) | database | |
| exists(int, int) (defined in database) | database | [virtual] |
| exists(string, string) (defined in database) | database | [virtual] |
| experimentsToClass() (defined in database) | database | [virtual] |
| getClassIndexForSample(unsigned int index) const =0 | motifDataset | [pure virtual] |
| getClassName(unsigned int index) const =0 | motifDataset | [pure virtual] |
| getClassNameForSample(unsigned int index) const =0 | motifDataset | [pure virtual] |
| getClassSize(unsigned int index) const =0 | motifDataset | [pure virtual] |
| getColumnIndex(string name) const =0 | motifDataset | [pure virtual] |
| getNumClasses() const =0 | motifDataset | [pure virtual] |
| getProbeInfo(string probeId, ProbeInfo &info) const | motifDataset | |
| getProbeURL() const (defined in motifDataset) | motifDataset | [inline, virtual] |
| getRowAliases(string name, set< string > &aliases) const | motifDataset | [virtual] |
| getRowAliases(const set< string > &names, set< string > &aliases) const | motifDataset | [virtual] |
| getRowIndex(string name) const =0 | motifDataset | [pure virtual] |
| getRowName(unsigned int index) const =0 | motifDataset | [pure virtual] |
| getRowsForAlias(string otherName, set< string > &rows) const | motifDataset | [virtual] |
| isAlias(string probe, string alias) const | motifDataset | [virtual] |
| isProbe(string id) const =0 | motifDataset | [pure virtual] |
| operator()(int, int) (defined in database) | database | [virtual] |
| operator()(string, string) (defined in database) | database | [virtual] |
| probes() (defined in database) | database | [virtual] |
| readProbeAliases(string aliasFile)=0 | motifDataset | [pure virtual] |
| readProbeInfo(string infoFile)=0 | motifDataset | [pure virtual] |
| samples() (defined in database) | database | [virtual] |
| setProbeURL(string url) (defined in motifDataset) | motifDataset | [inline, virtual] |
| writeData(string outfile) (defined in database) | database | |
1.7.6.1
