, including all inherited members.
_addAlias(string probe, string alias) (defined in motifDataset) | motifDataset | [inline, protected] |
_addInfo(string probe, string symbol, string name) (defined in motifDataset) | motifDataset | [inline, protected] |
_aliasesToProbes (defined in motifDataset) | motifDataset | [protected] |
_probesToAliases (defined in motifDataset) | motifDataset | [protected] |
_probesToInfo (defined in motifDataset) | motifDataset | [protected] |
_probeURL (defined in motifDataset) | motifDataset | [protected] |
classToExperiments()=0 (defined in motifDataset) | motifDataset | [pure virtual] |
computeClassIndexForSamples(const set< int > &columnSet, double frac=1) const =0 | motifDataset | [pure virtual] |
computeClassNameForSamples(const set< int > &columnSet, double frac=1) const =0 | motifDataset | [pure virtual] |
exists(int, int)=0 (defined in motifDataset) | motifDataset | [pure virtual] |
exists(string, string)=0 (defined in motifDataset) | motifDataset | [pure virtual] |
experimentsToClass()=0 (defined in motifDataset) | motifDataset | [pure virtual] |
getClassIndexForSample(unsigned int index) const =0 | motifDataset | [pure virtual] |
getClassName(unsigned int index) const =0 | motifDataset | [pure virtual] |
getClassNameForSample(unsigned int index) const =0 | motifDataset | [pure virtual] |
getClassSize(unsigned int index) const =0 | motifDataset | [pure virtual] |
getColumnIndex(string name) const =0 | motifDataset | [pure virtual] |
getNumClasses() const =0 | motifDataset | [pure virtual] |
getProbeInfo(string probeId, ProbeInfo &info) const | motifDataset | |
getProbeURL() const (defined in motifDataset) | motifDataset | [inline, virtual] |
getRowAliases(string name, set< string > &aliases) const | motifDataset | [virtual] |
getRowAliases(const set< string > &names, set< string > &aliases) const | motifDataset | [virtual] |
getRowIndex(string name) const =0 | motifDataset | [pure virtual] |
getRowName(unsigned int index) const =0 | motifDataset | [pure virtual] |
getRowsForAlias(string otherName, set< string > &rows) const | motifDataset | [virtual] |
isAlias(string probe, string alias) const | motifDataset | [virtual] |
isProbe(string id) const =0 | motifDataset | [pure virtual] |
operator()(int, int)=0 (defined in motifDataset) | motifDataset | [pure virtual] |
operator()(string, string)=0 (defined in motifDataset) | motifDataset | [pure virtual] |
probes()=0 (defined in motifDataset) | motifDataset | [pure virtual] |
readProbeAliases(string aliasFile)=0 | motifDataset | [pure virtual] |
readProbeInfo(string infoFile)=0 | motifDataset | [pure virtual] |
samples()=0 (defined in motifDataset) | motifDataset | [pure virtual] |
setProbeURL(string url) (defined in motifDataset) | motifDataset | [inline, virtual] |