readfile Member List

This is the complete list of members for readfile, including all inherited members.

_addAlias(string probe, string alias) (defined in motifDataset)	motifDataset	[inline, protected]
_addInfo(string probe, string symbol, string name) (defined in motifDataset)	motifDataset	[inline, protected]
_aliasesToProbes (defined in motifDataset)	motifDataset	[protected]
_probesToAliases (defined in motifDataset)	motifDataset	[protected]
_probesToInfo (defined in motifDataset)	motifDataset	[protected]
_probeURL (defined in motifDataset)	motifDataset	[protected]
classToExperiments() (defined in readfile)	readfile	[virtual]
computeClassIndexForSamples(const set< int > &columnSet, double frac=1) const	readfile	[virtual]
computeClassNameForSamples(const set< int > &columnSet, double frac=1) const	readfile	[virtual]
exists(int, int) (defined in readfile)	readfile	[virtual]
exists(string, string) (defined in readfile)	readfile	[virtual]
experimentsToClass() (defined in readfile)	readfile	[virtual]
getClassIndexForSample(unsigned int index) const	readfile	[virtual]
getClassName(unsigned int index) const	readfile	[virtual]
getClassNameForSample(unsigned int index) const	readfile	[virtual]
getClassSize(unsigned int index) const	readfile	[virtual]
getColumnIndex(string name) const	readfile	[virtual]
getNumClasses() const	readfile	[inline, virtual]
getProbeInfo(string probeId, ProbeInfo &info) const	motifDataset
getProbeURL() const (defined in motifDataset)	motifDataset	[inline, virtual]
getRowAliases(string name, set< string > &aliases) const	motifDataset	[virtual]
getRowAliases(const set< string > &names, set< string > &aliases) const	motifDataset	[virtual]
getRowIndex(string name) const	readfile	[virtual]
getRowName(unsigned int index) const	readfile	[virtual]
getRowsForAlias(string otherName, set< string > &rows) const	motifDataset	[virtual]
isAlias(string probe, string alias) const	motifDataset	[virtual]
isProbe(string id) const	readfile	[virtual]
MISSING_VALUE (defined in readfile)	readfile	[static]
operator()(int, int) (defined in readfile)	readfile	[virtual]
operator()(string, string) (defined in readfile)	readfile	[virtual]
probes() (defined in readfile)	readfile	[virtual]
readfile(set< int >, string, string) (defined in readfile)	readfile
readfile(const readfile &in) (defined in readfile)	readfile
readProbeAliases(string aliasFile)	readfile	[virtual]
readProbeInfo(string infoFile)	readfile	[virtual]
refactor(set< int > leaveOut) (defined in readfile)	readfile
samples() (defined in readfile)	readfile	[virtual]
setProbeURL(string url) (defined in motifDataset)	motifDataset	[inline, virtual]