Biorithm  1.1
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gain Directory Reference

Files

file  doc.h [code]
 

Documentation for tools in the gain directory.


file  evaluate-gain.C
 

Define and implement the MyGenericParams and MyEvalGainParams classes.


file  gain-algorithm.C
 

Implement the MyReallyAbstractGainAlgo, MyAbstractGainAlgo, MyOneVersusNoneGainAlgo, MyOneVersusNoneFunctionalFlowGainAlgo, MyOneVersusNoneHeavisideGainAlgo, MyOneVersusNoneShortestPathGainAlgo, MyOneVersusAllGainAlgo, MyOneVersusAllLocalGainAlgo, MyOneVersusAllHopfieldGainAlgo, MyOneVersusAllMincutGainAlgo, MyOneVersusAllSemiHierarchicalHopfieldGainAlgo, MyOneVersusAllHierarchicalHopfieldGainAlgo, MyOneVersusAllAbstractSVMGainAlgo, MyOneVersusAllLibSVMGainAlgo, MyOneVersusAllSVMLightGainAlgo, MyOneVersusAllSVMLightTransductiveGainAlgo, MyOneVersusAllSVMPerfGainAlgo, MyOneVersusAllSinkSourceGainAlgo, MyOneVersusNoneSinkSourceGainAlgo, MyOneVersusAllToNoneGainAlgo, MyOneVersusAllFunctionalFlowGainAlgo, and MyOneVersusAllGeneManiaGainAlgo classes defined in gain-algorithms.h.


file  gain-algorithm.h [code]
 

Define the MyReallyAbstractGainAlgo, MyAbstractGainAlgo, MyOneVersusNoneGainAlgo, MyOneVersusNoneFunctionalFlowGainAlgo, MyOneVersusNoneHeavisideGainAlgo, MyOneVersusNoneShortestPathGainAlgo, MyOneVersusAllGainAlgo, MyOneVersusAllLocalGainAlgo, MyOneVersusAllHopfieldGainAlgo, MyOneVersusAllMincutGainAlgo, MyOneVersusAllSemiHierarchicalHopfieldGainAlgo, MyOneVersusAllHierarchicalHopfieldGainAlgo, MyOneVersusAllAbstractSVMGainAlgo, MyOneVersusAllLibSVMGainAlgo, MyOneVersusAllSVMLightGainAlgo, MyOneVersusAllSVMLightTransductiveGainAlgo, MyOneVersusAllSVMPerfGainAlgo, MyOneVersusAllSinkSourceGainAlgo, MyOneVersusNoneSinkSourceGainAlgo, MyOneVersusAllToNoneGainAlgo, MyOneVersusAllFunctionalFlowGainAlgo, and MyOneVersusAllGeneManiaGainAlgo classes.


file  gain-params.C
 

Implement the MyGainParams class defined in gain.h.


file  gain-state.C
 

Implement the MyGainState class defined in gain-state.h.


file  gain-state.h [code]
 

Define the MyGainState class.


file  gain-traverse.h [code]
 

Define and implement the MyGainReduceDFSVisitor, MyGainReduce2DFSVisitor, MyGainPropagationBFSVisitor, and MyOneVersusAllGainAlgoPropagationBFSVisitor classes.


file  gain.C
 

Implement the MyGainGraph and MyGainOrf classes.


file  gain.h [code]
 

Define the MyGainNode, MyGainGraph, MyGainParams, and MyGainOrf classes.


file  hcc.C
file  rand_gather.C
 

Implement the rand_gather and rand_aggregate classes defined in rand_gather.C.


file  rand_gather.h [code]
 

Define the rand_gather and rand_aggregate classes.


file  reporter.C
 

Implement the Reporter class defined in reporter.h.


file  reporter.h [code]
 

Define the Reporter class.


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