libfun Directory Reference

Files
file	biofunction.h [code]
	Define the BioFunction class.
file	enrichment-algorithm.C
	Implement the LogHelper, FunctionalEnrichmentAlgorithm, RandomFunctionNetworkBasedEnrichmentAlgorithm, RandomUniverseNetworkBasedEnrichmentAlgorithm, HypergeometricAlgorithm, PAGEAlgorithm, GenGOAlgorithm, GroupHypAlgorithm, EdgeGroupHyp, FuncAssociate, SetCoverEnrichment, and FunctionalEnrichmentAlgorithmDispatcher classes defined in enrichment-algorithm.h.
file	enrichment-algorithm.h [code]
	Define the LogHelper, FunctionalEnrichmentAlgorithm, RandomFunctionNetworkBasedEnrichmentAlgorithm, RandomUniverseNetworkBasedEnrichmentAlgorithm, HypergeometricAlgorithm, PAGEAlgorithm, GenGOAlgorithm, GroupHypAlgorithm, EdgeGroupHyp, FuncAssociate, SetCoverEnrichment, and FunctionalEnrichmentAlgorithmDispatcher classes.
file	GO.C
	Implement the GOFunction and GeneOntology classes defined in GO.h.
file	GO.h [code]
	Define the GOFunction and GeneOntology classes.
file	old-annotations.C
	Implement the GOEvidenceCodes and MyAnnotations classes defined in old-annotations.h.
file	old-annotations.h [code]
	Define the GOEvidenceCodes and MyAnnotations classes.
file	setTemplates.cpp
	Implement various template functions for manipulating sets.