Biorithm  1.1
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Files

file  biofunction.h [code]
 

Define the BioFunction class.


file  enrichment-algorithm.C
 

Implement the LogHelper, FunctionalEnrichmentAlgorithm, RandomFunctionNetworkBasedEnrichmentAlgorithm, RandomUniverseNetworkBasedEnrichmentAlgorithm, HypergeometricAlgorithm, PAGEAlgorithm, GenGOAlgorithm, GroupHypAlgorithm, EdgeGroupHyp, FuncAssociate, SetCoverEnrichment, and FunctionalEnrichmentAlgorithmDispatcher classes defined in enrichment-algorithm.h.


file  enrichment-algorithm.h [code]
 

Define the LogHelper, FunctionalEnrichmentAlgorithm, RandomFunctionNetworkBasedEnrichmentAlgorithm, RandomUniverseNetworkBasedEnrichmentAlgorithm, HypergeometricAlgorithm, PAGEAlgorithm, GenGOAlgorithm, GroupHypAlgorithm, EdgeGroupHyp, FuncAssociate, SetCoverEnrichment, and FunctionalEnrichmentAlgorithmDispatcher classes.


file  GO.C
 

Implement the GOFunction and GeneOntology classes defined in GO.h.


file  GO.h [code]
 

Define the GOFunction and GeneOntology classes.


file  old-annotations.C
 

Implement the GOEvidenceCodes and MyAnnotations classes defined in old-annotations.h.


file  old-annotations.h [code]
 

Define the GOEvidenceCodes and MyAnnotations classes.


file  setTemplates.cpp
 

Implement various template functions for manipulating sets.


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